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Blast database #76

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Artifice120 opened this issue Aug 5, 2024 · 0 comments
Open

Blast database #76

Artifice120 opened this issue Aug 5, 2024 · 0 comments

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@Artifice120
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Afternoon,

Quick question, should the blast search be using the two genomes being compared as a database or should both genomes be used as queries for a blast search against a standard nr database?

After running a blast search using the two genomes as a database, I receive zero matches despite having many significant blast results.

command used

 ./MCScanX /lustre/isaac/scratch/jtorre28/homology-contigs
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@Artifice120