test-coverm.yml

name: Test CoverM with Setup-Miniconda From Marketplace
on: [push, pull_request]

jobs:
  miniconda_linux:
    name: Miniconda (${{ matrix.python-version }}, ${{ matrix.os }})
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: ["ubuntu-latest"]
        # python-version: ["3.11"]
    steps:
      - uses: conda-incubator/setup-miniconda@v3
        with:
          # auto-update-conda: true
          # python-version: ${{ matrix.python-version }}
          environment-file: environment.yml
          channels: conda-forge,defaults,bioconda
      - name: Conda info
        shell: bash -el {0}
        run: conda info
      - name: Conda list
        shell: pwsh
        run: conda list
      - name: Run test
        run: |
            cargo test
  # miniconda_osx:
  #   name: miniconda_osx (${{ matrix.python-version }}, ${{ matrix.os }})
  #   runs-on: ${{ matrix.os }}
  #   strategy:
  #     fail-fast: false
  #     matrix:
  #       os: ["macos-latest"]
  #       python-version: ["3.11"]
  #   steps:
  #     - uses: conda-incubator/setup-miniconda@v3
  #       with:
  #         auto-update-conda: true
  #         python-version: ${{ matrix.python-version }}
  #         environment-file: ../coverm-osx.yml
  #         channels: conda-forge,defaults,bioconda
  #     - name: Conda info
  #       shell: bash -el {0}
  #       run: conda info
  #     - name: Conda list
  #       shell: pwsh
  #       run: conda list
  #     - name: Run test
  #       run: |
  #         cargo test -- --skip bwa_mem2