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use bash -el shell for test #97

use bash -el shell for test

use bash -el shell for test #97

Workflow file for this run

name: Test CoverM with Setup-Miniconda From Marketplace
on: [push, pull_request]
jobs:
miniconda_linux:
name: Miniconda (${{ matrix.python-version }}, ${{ matrix.os }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ["ubuntu-latest"]
python-version: ["3.11"]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
environment-file: coverm.yml
channels: conda-forge,defaults,bioconda
mamba-version: "*"
- name: Conda info
shell: bash -el {0}
run: conda info
- name: Conda list
shell: pwsh
run: conda list
- name: Run test
shell: bash -el {0}
run: |
cargo test
miniconda_osx:
name: miniconda_osx (${{ matrix.python-version }}, ${{ matrix.os }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ["macos-latest"]
python-version: ["3.11"]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
environment-file: coverm-osx.yml
channels: conda-forge,defaults,bioconda
mamba-version: "*"
- name: Conda info
shell: bash -el {0}
run: conda info
- name: Conda list
shell: pwsh
run: conda list
- name: Run test
run: |
cargo test -- --skip bwa_mem2