actions: Attempt to fix env file path. #77
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name: Test CoverM with Setup-Miniconda From Marketplace | |
on: [push, pull_request] | |
jobs: | |
miniconda_linux: | |
name: Miniconda (${{ matrix.python-version }}, ${{ matrix.os }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest"] | |
python-version: ["3.11"] | |
steps: | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
environment-file: ../coverm.yml | |
channels: conda-forge,defaults,bioconda | |
- name: Conda info | |
shell: bash -el {0} | |
run: conda info | |
- name: Conda list | |
shell: pwsh | |
run: conda list | |
- name: Run test | |
run: | | |
cargo test | |
miniconda_osx: | |
name: miniconda_osx (${{ matrix.python-version }}, ${{ matrix.os }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["macos-latest"] | |
python-version: ["3.11"] | |
steps: | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
environment-file: ../coverm-osx.yml | |
channels: conda-forge,defaults,bioconda | |
- name: Conda info | |
shell: bash -el {0} | |
run: conda info | |
- name: Conda list | |
shell: pwsh | |
run: conda list | |
- name: Run test | |
run: | | |
cargo test -- --skip bwa_mem2 |