From ccfb649087bd703f099f6c1f2f635cd0596f753b Mon Sep 17 00:00:00 2001 From: Tobi Alegbe Date: Mon, 9 Oct 2023 21:28:34 +0100 Subject: [PATCH] Update keras labels --- assets/keras_cluster/data-cluster_labels.csv | 38 ++++++++++---------- 1 file changed, 19 insertions(+), 19 deletions(-) diff --git a/assets/keras_cluster/data-cluster_labels.csv b/assets/keras_cluster/data-cluster_labels.csv index 702c526c..becb729f 100755 --- a/assets/keras_cluster/data-cluster_labels.csv +++ b/assets/keras_cluster/data-cluster_labels.csv @@ -1,50 +1,50 @@ cluster,category,label,category__machine,label__machine -0,T Cell,T cell CD8 (1),T_Cell,T_cell_CD8_1 +0,T Cell,T cell CD8+ tissue-resident,T_Cell,T_cell_CD8plus_tissueminusresident 1,B Cell,B cell naive,B_Cell,B_cell_naive -2,B Cell plasma,B cell plasma IgA CD38++,B_Cell_plasma,B_cell_plasma_IgA_CD38plusplus +2,B Cell plasma,B cell plasma IgA (2),B_Cell_plasma,B_cell_plasma_IgA_2 3,B Cell,B cell memory (1),B_Cell,B_cell_memory_1 -4,T Cell,T cell CD4 CD40LG+ (1),T_Cell,T_cell_CD4_CD40LGplus_1 +4,T Cell,T cell CD4+ memory,T_Cell,T_cell_CD4plus_memory 5,T Cell,T cell CD4 naive,T_Cell,T_cell_CD4_naive -6,T Cell,T cell CD4 CD40LG+ (2),T_Cell,T_cell_CD4_CD40LGplus_2 +6,T Cell,T cell CD4+ PASK+ CCR7+,T_Cell,T_cell_CD4plus_PASKplus_CCR7plus 7,Stem cells,Stem cell LGR5+,Stem_cells,Stem_cell_LGR5plus 8,B Cell,B cell memory (2),B_Cell,B_cell_memory_2 -9,T Cell,T cell CD4 CD40LG+ (3),T_Cell,T_cell_CD4_CD40LGplus_3 +9,T Cell,T cell CD4+ CXCR6+ memory,T_Cell,T_cell_CD4plus_CXCR6plus_memory 10,Secretory,Goblet cell middle villus,Secretory,Goblet_cell_middle_villus -11,B Cell plasma,B cell plasma IgA CD38+++,B_Cell_plasma,B_cell_plasma_IgA_CD38plusplusplus -12,B Cell plasma,B cell plasma IgA CD38+,B_Cell_plasma,B_cell_plasma_IgA_CD38plus +11,B Cell plasma,B cell plasma IgA (3),B_Cell_plasma,B_cell_plasma_IgA_3 +12,B Cell plasma,B cell plasma IgA (1),B_Cell_plasma,B_cell_plasma_IgA_1 13,Stem cells,Stem cell MKI67+ (1),Stem_cells,Stem_cell_MKI67plus_1 -14,Myeloid,Mac resident IL10RA-,Myeloid,Mac_resident_IL10RAminus +14,Myeloid,Mac (2),Myeloid,Mac_2 15,Enterocyte,Enterocyte middle villus (1),Enterocyte,Enterocyte_middle_villus_1 16,Enterocyte,Enterocyte progenitor crypt OLFM4++ KRT20+ (1),Enterocyte,Enterocyte_progenitor_crypt_OLFM4plusplus_KRT20plus_1 17,Enterocyte,Enterocyte precursor crypt OLFM4+ KRT20++,Enterocyte,Enterocyte_precursor_crypt_OLFM4plus_KRT20plusplus -18,T Cell,T cell CD4 Treg,T_Cell,T_cell_CD4_Treg +18,T Cell,T cell CD4+ Treg,T_Cell,T_cell_CD4plus_Treg 19,Secretory,Goblet cell top villus,Secretory,Goblet_cell_top_villus 20,Enterocyte,Enterocyte middle villus (2),Enterocyte,Enterocyte_middle_villus_2 21,Secretory,Paneth cell,Secretory,Paneth_cell 22,Enterocyte,Enterocyte progenitor crypt OLFM4++ KRT20+ (2),Enterocyte,Enterocyte_progenitor_crypt_OLFM4plusplus_KRT20plus_2 -23,T Cell,T cell CD8 (2),T_Cell,T_cell_CD8_2 +23,T Cell,T cell CD8+ GZMK+,T_Cell,T_cell_CD8plus_GZMKplus 24,Stem cells,Stem cell MKI67+ (2),Stem_cells,Stem_cell_MKI67plus_2 25,Enterocyte,Enterocyte top villus,Enterocyte,Enterocyte_top_villus -26,Myeloid,MoMac IL10RA+,Myeloid,MoMac_IL10RAplus +26,Myeloid,Mac intermediate (1),Myeloid,Mac_intermediate_1 27,B Cell,B cell,B_Cell,B_cell 28,T Cell,T cell gd,T_Cell,T_cell_gd 29,Myeloid,Dendritic cell,Myeloid,Dendritic_cell 30,T Cell,T cell CD4- CD8-,T_Cell,T_cell_CD4minus_CD8minus 31,B Cell,B cell germinal centre/plasmablasts,B_Cell,B_cell_germinal_centre_slash_plasmablasts -32,Myeloid,Mac resident IL10RA+,Myeloid,Mac_resident_IL10RAplus -33,T Cell,T cell CD8 (3),T_Cell,T_cell_CD8_3 +32,Myeloid,Mac (1),Myeloid,Mac_1 +33,T Cell,T cell CD8+ FGFBP2+ effector,T_Cell,T_cell_CD8plus_FGFBP2plus_effector 34,B Cell,B cell activated,B_Cell,B_cell_activated -35,Mast,Mast,Mast,Mast -36,Myeloid,MoMac IL10RA-,Myeloid,MoMac_IL10RAminus -37,Tuft cell,Tuft cell,Tuft_cell,Tuft_cell +35,Myeloid,Mast,Myeloid,Mast +36,Myeloid,Mac intermediate (2),Myeloid,Mac_intermediate_2 +37,Secretory,Tuft cell,Secretory,Tuft_cell 38,Secretory,Goblet cell crypt MKI67+,Secretory,Goblet_cell_crypt_MKI67plus 39,Myeloid,Monocytes,Myeloid,Monocytes -40,T Cell,ILC1 CD3D- NCAM1+,T_Cell,ILC1_CD3Dminus_NCAM1plus -41,Mesenchymal,Fibroblast/Myofibroblasts,Mesenchymal,Fibroblast_slash_myofibroblasts +40,T Cell,ILC1/NKs,T_Cell,ILC1_slash_NKs +41,Mesenchymal,Fibroblast/Myofibroblasts,Mesenchymal,Fibroblast_slash_Myofibroblasts 42,Secretory,Endocrine cell,Secretory,Endocrine_cell 43,Enterocyte,Enterocytes BEST4,Enterocyte,Enterocytes_BEST4 44,T Cell,T cell CD4 proliferating,T_Cell,T_cell_CD4_proliferating 45,Mesenchymal,Endothelial cell,Mesenchymal,Endothelial_cell -46,T Cell,ILC3 CD3D- IL23R+,T_Cell,ILC3_CD3Dminus_IL23Rplus +46,T Cell,ILC3,T_Cell,ILC3 47,Mesenchymal,Pericytes,Mesenchymal,Pericytes 48,Mesenchymal,Smooth muscle cell,Mesenchymal,Smooth_muscle_cell