requirements.txt

# Python package dependencies.
# This file is copied to $ROOT/requirements.txt during configure. The reason
# for this is because the TensorFlow package is replaced with tensorflow-gpu
# if --with-cuda is enabled.
absl-py==0.7.0
appdirs==1.4.3
appnope==0.1.0
ascii_art==0.1.0
aspy.refactor-imports==1.1.0
astroid==1.6.1
attrs==19.3.0
autoenv==1.0.0
backports-abc==0.5
backports.functools-lru-cache==1.5
backports.shutil-get-terminal-size==1.0.0
bibtexparser==1.1.0
bleach==1.5.0
bokeh==1.0.2
cached-property==1.5.1
certifi==2018.4.16  # Dependency of requests.
cffi==1.11.5
chardet==3.0.4  # Dependency of requests.
checksumdir==1.0.5
Click==7.0
configparser==3.5.0
coverage==4.5.1  # Needed by pytest-cov.
cpplint==1.3.0
cycler==0.10.0
dash==0.39.0
dash-core-components==0.44.0
dash-html-components==0.14.0
dash-renderer==0.20.0
dash-table==3.6.0
dataclasses==0.6
decorator==4.3.0
detect-secrets==0.12.4
# The graph_nets package depends on a specific version of dm-sonnet. See:
# https://github.com/deepmind/graph_nets/blob/master/setup.py
dm-sonnet==1.23
docutils==0.14
editdistance==0.3.1
entrypoints==0.2.3
enum34==1.1.6
fasteners==0.15
flaky==3.6.1
Flask==1.0.2
Flask-Compress==1.4.0
flask-cors==3.0.6
Flask-SQLalchemy==2.4.0
fs==2.4.8
fs.sshfs==0.11.1
funcsigs==1.0.2
futures==3.1.1
fuzzywuzzy==0.16.0
gast==0.2.2. # Dependency of tensorflow.
gitdb==4.0.2
GitPython==3.1.0
GPUtil==1.4.0
graph_nets==1.0.2
graphviz==0.9
grpcio-tools==1.18.0
grpcio==1.18.0
gspread==3.1.0
gspread-dataframe==3.0.3
gym==0.10.5
h5py==2.9.0
html5lib==0.9999999
httplib2==0.14  # Needed by oauth2client
humanize==0.5.1
importlib-metadata==0.23  # Needed by pytest.
idna==2.6  # Dependency of requests.
inotify==0.2.10
ipaddress==1.0.23  # Dependency of urllib3
ipdb==0.11
ipykernel==4.8.2
ipython-genutils==0.2.0
ipython==5.7.0
ipywidgets==7.1.2
isort==4.3.4
itsdangerous==1.1.0  # Dependency of dash.
jedi==0.11.1
jinja2==2.10.1
jsonschema==2.6.0
jupyter-client==5.2.2
jupyter-console==5.2.0
jupyter-core==4.4.0
jupyter==1.0.0
# Support for local runtimes with Google Colaboratory. See:
# https://research.google.com/colaboratory/local-runtimes.html
jupyter_http_over_ws==0.0.7
jwt==0.6.1  # Dependency PyGithub.
Keras==2.3.1
kiwisolver==1.0.1
lazy-object-proxy==1.3.1
lru-dict==1.1.6
MarkupSafe==1.1.1
matplotlib==2.2.0rc1
mccabe==0.6.1
memory-profiler==0.55.0
mistune==0.8.3
monotonic==1.5  # Needed by fasteners.
more-itertools==7.2.0  # Need by pytest.
mypy-extensions==0.4.3
mysqlclient==1.4.2.post1
nbconvert==5.3.1
nbformat==4.4.0  # Needed by notebook.
networkx==2.2
notebook==5.7.8
numpy==1.16.4
oauth2client==4.1.3
packaging==19.2  # Needed by pytest.
pandas==0.24.1
pandas-bokeh==0.0.2
pandocfilters==1.4.2
paramiko==2.6.0  # Needed by fs.ssh.
parso==0.1.1
pathlib2==2.3.2
pathlib==1.0.1
pathspec==0.7.0
pexpect==4.4.0
pickleshare==0.7.4
plotly==3.7.0
pluggy==0.13.0  # Needed by pytest.
ply==3.11
portpicker==1.3.1
prettytable==0.7.2
progressbar2==3.37.1
prometheus_client==0.6.0  # Needed by notebook.
prompt-toolkit==1.0.15
property-cached==1.6.3
protobuf==3.6.1
psutil==5.4.5
psycopg2-binary==2.8.3
ptvsd==4.3.2
ptyprocess==0.5.2
py-cpuinfo==3.3.0
py==1.5.2
# At the time of writing (2018-05-10), the most recent version of pycparser is
# version 2.18, however, it breaks cldrive with error:
#   Traceback (most recent call last):
#     File "<snip>/phd/gpu/cldrive/legacy/__init__.py", line 7, in <module>
#       from gpu.cldrive.args import *
#     File "<snip>/phd/gpu/cldrive/legacy/args.py", line 242, in <module>
#       __parser = OpenCLCParser()
#     File "<snip>/site-packages/pycparserext/ext_c_parser.py", line 47, in __init__
#       debug=yacc_debug, write_tables=False)
#     File "<snip>/site-packages/pycparser/ply/yacc.py", line 3426, in yacc
#       raise YaccError('Unable to build parser')
#   pycparser.ply.yacc.YaccError: Unable to build parser
pycparser==2.17
pycparserext==2016.2
pydot==1.4.1
PyGithub==1.39
Pygments==2.2.0
pybind11==2.4.2  # Needed by pyopencl.
pyfiglet==0.8.post1
pylint==1.8.2
pyopencl==2018.2.5
pyOpenSSL==19.1.0  # Needed by urllib3.
pyparsing==2.2.0
pytest-benchmark==3.2.2
pytest-cov==2.8.1
pytest-mock==1.12.1
pytest-shard==0.1.1
pytest==5.3.1
python-dateutil==2.6.1
python-Levenshtein==0.12.0
python-utils==2.3.0
python-xmp-toolkit==2.0.1
pytools==2018.1
pytz==2018.3
PyYAML==4.2b4
pyzmq==19.0.1
pyasn1==0.4.7  # Needed by oauth2client.
pyasn1_modules==0.2.7  # Needed by oauth2client.
qtconsole==4.3.1
regex==2019.11.1
reorder-python-imports==1.9.0
requests==2.20.1
retrying==1.3.3  # Needed by plotly.
rsa==4.0  # Needed by oauth2client.
scandir==1.7
scikit-learn==0.20.3
scikit-image==0.14.2
scipy==1.2.1
seaborn==0.9.0
Send2Trash==1.5.0
simplegeneric==0.8.1
singledispatch==3.4.0.3
six==1.11.0  # Needed by absl.
smmap==3.0.1  # Needed by gitdb.
SQLAlchemy==1.3.10
sqlparse==0.3.0
statistics==1.0.3.5
subprocess32==3.5.0
tabulate==0.8.5
tensorflow==1.14.0  # NOTE: Must be installed manually with `pip install`.
terminado==0.8.1
testpath==0.3.1
TogglPy==0.1.1
toml==0.10.0
torch==1.3.0
tornado==5.0
tqdm==4.38.0
traitlets==4.3.2
trash-cli==0.17.1.14
typed-ast==1.4.1
typing-extensions==3.7.4.1
umap==0.1.1
urllib3==1.24.2  # Needed by requests.
virtualenv==15.1.0
wcwidth==0.1.7
webencodings==0.5.1
Werkzeug==0.15.3  # Needed by Flask.
wget==3.2
widgetsnbextension==3.1.4
wrapt==1.11.2
zipp==0.6.0  # Needed by pytest.