DESCRIPTION

Package: bugphyzz
Title: A harmonized data resource and software for enrichment analysis of microbial physiologies
Version: 1.1.0
Authors@R: 
    c(
        person(
            given = "Samuel",
            family = "Gamboa",
            role = c("aut", "cre"),
            email = "Samuel.Gamboa.Tuz@gmail.com",
            comment = c(ORCID = "0000-0002-6863-7943")
        ),
        person(
            given = "Levi",
            family = "Waldron",
            role = c("aut"),
            email = "levi.waldron@sph.cuny.edu",
            comment = c(ORCID = "0000-0003-2725-0694")
        ),
        person(
            given = "Kelly",
            family = "Eckenrode",
            role = c("aut")
        ),
        person(
            given = "Jonathan",
            family = "Ye",
            role = c("aut")
        ),
        person(
            given = "Jennifer",
            family = "Wokaty",
            role = c("aut")
        )
    )
Description: bugphyzz is an electronic database of standardized microbial
  annotations. It facilitates the creation of microbial signatures based on
  shared attributes, which are utilized for bug set enrichment analysis. The
  data also includes annotations imputed with ancestra state
  reconstruction methods.
biocViews:
    MicrobiomeData,
    ReproducibleResearch
License: Artistic-2.0
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Depends: 
    R (>= 4.4)
Imports: 
    dplyr,
    utils,
    purrr,
    stringr,
    tidyr,
    tidyselect,
    BiocFileCache,
    httr2,
    tools,
    S4Vectors
Suggests: 
    DT,
    forcats,
    ggplot2,
    htmltools,
    knitr,
    rmarkdown,
    sessioninfo,
    testthat,
    EnrichmentBrowser,
    MicrobiomeBenchmarkData,
    mia,
    stats,
    rlang,
    limma,
    mgsub,
    methods,
    readr,
    crayon,
    tibble,
    magrittr,
    tidytext,
    BiocStyle
URL: https://github.com/waldronlab/bugphyzz
BugReports: https://github.com/waldronlab/bugphyzz/issues