No matching distribution found for is3g

[Boehmin]

It seems that is3g is not available via pypi anymore. When running
pip install is3g I receive the following error message:

(is3g) [boehm0002@login01 ~]$ pip install is3g
ERROR: Could not find a version that satisfies the requirement is3g (from versions: none)
ERROR: No matching distribution found for is3g

I was able to install the package via git clone.

(EDIT: found the python version - I was just blind ;) )

[cavenel]

Hi @Boehmin, and thanks for reporting this.
@jwindhager will come back to you on Monday!

[jwindhager]

Hi @Boehmin,

Apologies for the delay. The main author of is3g, @axanderssonuu, is currently transitioning to another position, but I've taken a brief look at it. I've managed to get the minimal_example.ipynb notebook running in JupyterLab by installing and running the development version of is3g into a fresh conda environment as follows (the toy data used in the notebook is here):

conda create -n is3g python
conda activate is3g
python -m pip install jupyterlab matplotlib seaborn ipywidgets
python -m pip install git+https://github.com/wahlby-lab/is3g
jupyter lab

I hope this helps - please let us know here if this doesn't work!

@axanderssonuu Could you please publish the package to PyPI (by creating a release, e.g. v0.1.0) and update the README instructions and/or Jupyter notebook to also include the extra dependencies? Also, the link to the example notebook seems to be broken in the README. Alternatively, please let me know if I should take over for this!

[Boehmin]

Hi @jwindhager

Thanks for looking at this. I did manage to get it to run without issues by running the development version. I found a very neat use for it to clean up ISS-signal outside of my tissue sections (screenshot below) - maybe this "feature" can be useful to others too. :)

[jwindhager]

Hi @axanderssonuu, any update on publishing the package to PyPI/updating the documentation/notebooks?