diff --git a/473_ChewBBACA/chewBBACA.eb b/473_ChewBBACA/chewBBACA.eb index c3fb1dc..09f05c4 100644 --- a/473_ChewBBACA/chewBBACA.eb +++ b/473_ChewBBACA/chewBBACA.eb @@ -14,23 +14,6 @@ The "chew" part adds extra coolness to the name and could be thought of as toolchain = {'name': 'foss', 'version': '2023a'} -# DEPS: - # OK "numpy~=1.24.3", - # OK "scipy~=1.10.1", - # OK "biopython>=1.79", - # OK "plotly>=5.8.0", - # ok "SPARQLWrapper>=2.0.0", - # OK "pandas>=1.5.1,<2.1", - # OK "requests>=2.27.1", - # ok "pyrodigal>=3.0.0" - # OK BLAST >=2.9.0 (we recommend using BLAST 2.9.0+) - # NO - not need Prodigal >=2.6.3 (for chewBBACA <3.3.0) - # OK MAFFT >=7.505 (for schema evaluation only) - # OK FastTree >=2.1.11 (for allele calling evaluation only) - # OK pyrodigal 3.6.3 requires archspec, which is not installed. - # OK chewbbaca 3.3.10 has requirement numpy~=1.24.3, but you have numpy 1.25.1. - # OK chewbbaca 3.3.10 has requirement scipy~=1.10.1, but you have scipy 1.11.1. - builddependencies = [ ('scikit-build-core', '0.9.3'), ('poetry', '1.5.1'), @@ -51,10 +34,11 @@ dependencies = [ use_pip = True sanity_pip_check = True -local_preinstallopts = ("sed -i " -"-e 's/numpy~=1.24.3/numpy>=1.24.3/g' " -"-e 's/scipy~=1.10.1/scipy>=1.10.1/g' " -'pyproject.toml && ' +local_preinstallopts = ( + "sed -i " + "-e 's/numpy~=1.24.3/numpy>=1.24.3/g' " + "-e 's/scipy~=1.10.1/scipy>=1.10.1/g' " + 'pyproject.toml && ' ) exts_list = [