From c644ba914c4026a44c06ab6e3f323508adb34177 Mon Sep 17 00:00:00 2001
From: alexPatrie <alexanderpatrie@gmail.com>
Date: Sun, 7 Jan 2024 17:17:34 -0500
Subject: [PATCH] updates to dockerfile

---
 Dockerfile            | 32 ++++++++++++++++++++++----------
 README.md             |  2 +-
 scripts/run-docker.sh |  5 ++++-
 3 files changed, 27 insertions(+), 12 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 7933b0a02..433cf95d2 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,6 +1,6 @@
 # TODO: Make this work for Smoldyn to be platform-agnostic
 
-FROM python:3.10-bullseye
+FROM ubuntu:22.04
 
 # Implement the next two lines for use in Cloud
 # RUN useradd -m simuser
@@ -12,19 +12,31 @@ WORKDIR /app
 COPY . /app
 
 RUN apt-get update && apt-get install -y \
-    build-essential \
     wget \
-    libgl1-mesa-dev \
-    libglu1-mesa-dev \
+    # Add any other dependencies required by smoldyn
     && rm -rf /var/lib/apt/lists/*
 
-RUN echo 'deb http://download.opensuse.org/repositories/home:/dilawar/Debian_11/ /' | tee /etc/apt/sources.list.d/home:dilawar.list
-RUN curl -fsSL https://download.opensuse.org/repositories/home:dilawar/Debian_11/Release.key | gpg --dearmor | tee /etc/apt/trusted.gpg.d/home_dilawar.gpg > /dev/null
-RUN apt update
-RUN apt install smoldyn
+# Download the smoldyn .deb package
+RUN wget https://download.opensuse.org/repositories/home:/dilawar/xUbuntu_22.04/amd64/smoldyn_2.64.4-1+2.1_amd64.deb
+
+# Install the downloaded package
+RUN dpkg -i smoldyn_2.64.4-1+2.1_amd64.deb
+
+
+# RUN apt-get update && apt-get install -y \
+#     build-essential \
+#     wget \
+#     libgl1-mesa-dev \
+#     libglu1-mesa-dev \
+#     # && rm -rf /var/lib/apt/lists/*
+
+# RUN echo 'deb http://download.opensuse.org/repositories/home:/dilawar/Debian_11/ /' | tee /etc/apt/sources.list.d/home:dilawar.list
+# RUN curl -fsSL https://download.opensuse.org/repositories/home:dilawar/Debian_11/Release.key | gpg --dearmor | tee /etc/apt/trusted.gpg.d/home_dilawar.gpg > /dev/null
+# RUN apt update
+# RUN apt install smoldyn
 
 RUN pip install --upgrade pip \
-    && pip install . ipython
-    # && pytest
+    && pip install ipython \
+    && pip install .
 
 CMD ["ipython3"]
diff --git a/README.md b/README.md
index 3b3be4540..93a3047a7 100644
--- a/README.md
+++ b/README.md
@@ -17,7 +17,7 @@ install the dependencies required for your use.
 
  Most of the direct UI content for this tooling will be in the form of a jupyter notebook.
 
-### Using `core_processes.smoldyn_process.SmoldynProcess()`: 
+### Using `biosimulator_processes.smoldyn_process.SmoldynProcess()`: 
 
 #### PLEASE NOTE: 
 Due to the multi-lingual nature of Smoldyn, which is primarily 
diff --git a/scripts/run-docker.sh b/scripts/run-docker.sh
index f0dc7620a..624f92221 100755
--- a/scripts/run-docker.sh
+++ b/scripts/run-docker.sh
@@ -1,2 +1,5 @@
 #!/bin/bash
-docker build -t biosimulator-processes . && docker run -it biosimulator-processes
+docker buildx create --name biosimbuilder --use
+docker buildx inspect --bootstrap
+docker buildx build --platform linux/amd64 -t biosimulator-processes . \
+  && docker run biosimulator-processes