README.md

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vcell-solvers

Virtual Cell solvers virtualcell/vcell-solvers is a collection of numerical simulation codes used in the Virtual Cell framework virtualcell/vcell).

The Virtual Cell Project

The Virtual Cell is a modeling and simulation framework for computational biology. For details see http://vcell.org and http://github.com/virtualcell.

Building VCell Solvers

Using VirtualBox and Vagrant

• git clone https://github.com/virtualcell/vcell.git
• cd vcell/VagrantBoxes

Building for Linux (64 bit)

details

$ cd linux64
$ vagrant up
$ vagrant ssh -c /vagrant_numerics/build.sh
$ vagrant halt

Building for Linux (32 bit)

details

$ cd linux32
$ vagrant up
$ vagrant ssh -c /vagrant_numerics/build.sh
$ vagrant halt

Building for Macos on a Mac Apple only allows a Mac VM to run on Apple hardware

[details}(VagrantBoxes/mac64/README.md)

$ cd mac64
$ vagrant up
$ vagrant ssh -c /vagrant/build.sh
$ vagrant halt

Building for Windows (64 bit) on Windows

details: including building on other platforms

$ cd win64
$ vagrant up
$ vagrant powershell -c \vagrant\build.sh
$ vagrant halt