From 896fd6e5b66ff8d7f98ff2948cfef0cf971175fe Mon Sep 17 00:00:00 2001
From: Ian <igboyes@gmail.com>
Date: Fri, 24 May 2024 13:57:25 -0700
Subject: [PATCH] fix: compile bowtie2 from scratch

---
 Dockerfile | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index ab3876f..aeffe54 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,10 +1,12 @@
 FROM debian:bookworm as bowtie2
 WORKDIR /build
-RUN apt-get update && apt-get install -y unzip wget
-RUN wget https://github.com/BenLangmead/bowtie2/releases/download/v2.5.4/bowtie2-2.5.4-linux-x86_64.zip
-RUN unzip bowtie2-2.5.4-linux-x86_64.zip
-RUN mkdir bowtie2
-RUN cp bowtie2-2.5.4-linux-x86_64/bowtie2* bowtie2
+RUN apt-get update && apt-get install -y build-essential cmake wget zlib1g-dev
+RUN wget https://github.com/BenLangmead/bowtie2/archive/refs/tags/v2.5.4.tar.gz
+RUN tar -xvf v2.5.4.tar.gz
+WORKDIR bowtie2-2.5.4
+RUN make
+RUN mkdir /build/bowtie2
+RUN cp bowtie2* /build/bowtie2/
 
 FROM debian:bookworm as spades
 WORKDIR /build