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fix: use better step naming
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* Use "Compute GC and count".
* Update to virtool-workflow==4.2.1 to enable explicit step naming.
* Import `fixture` from `pyfixtures`.
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igboyes committed Jun 3, 2022
1 parent c961b5a commit 63f38f5
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Showing 4 changed files with 109 additions and 96 deletions.
4 changes: 2 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ COPY /utils/count_nucleotides_and_seqs/ /build/
RUN ls
RUN cargo build -r

FROM virtool/workflow:4.0.2 as test
FROM virtool/workflow:4.2.1 as test
WORKDIR /test
COPY poetry.lock pyproject.toml /test/
RUN pip install poetry
Expand All @@ -15,7 +15,7 @@ COPY workflow.py /test/
RUN poetry run pytest


FROM virtool/workflow:4.0.2
FROM virtool/workflow:4.2.1
WORKDIR /workflow
COPY --from=rust /build/target/release/count_nucleotides_and_seqs /workflow/
COPY workflow.py /workflow/workflow.py
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