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env.yml
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env.yml
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name: FLIGHTED
channels:
- pytorch
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- anyio=3.7.1=pyhd8ed1ab_0
- aom=3.6.1=h59595ed_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py39hd1e30aa_4
- asttokens=2.4.1=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- babel=2.13.1=pyhd8ed1ab_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
- beautifulsoup4=4.12.2=pyha770c72_0
- biopython=1.78=py39h7f8727e_0
- blas=2.3=openblas
- blasr=5.3.5=0
- blasr_libcpp=5.3.3=h707fff8_0
- bleach=6.1.0=pyhd8ed1ab_0
- bottleneck=1.3.7=py39h44dd56e_1
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py39h3d6467e_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.21.0=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cairo=1.18.0=h3faef2a_0
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.16.0=py39h7a31438_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- comm=0.1.4=pyhd8ed1ab_0
- contourpy=1.2.0=py39h7633fee_0
- cudatoolkit=11.6.0=hecad31d_10
- curl=7.88.1=hdc1c0ab_1
- cycler=0.12.1=pyhd8ed1ab_0
- cyrus-sasl=2.1.28=h52b45da_1
- daal4py=2021.5.0=py39h78b71dc_0
- dal=2021.5.1=h06a4308_803
- daligner=1.0.20200322=h779adbc_1
- dav1d=1.2.1=hd590300_0
- dazz_db=1.0=0
- dbus=1.13.18=hb2f20db_0
- debugpy=1.8.0=py39h3d6467e_1
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.1.3=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- ffmpeg=6.0.0=gpl_h334edf3_105
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.44.0=py39hd1e30aa_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- glib=2.78.1=hfc55251_0
- glib-tools=2.78.1=hfc55251_0
- gmp=6.2.1=h58526e2_0
- gnutls=3.7.8=hf3e180e_0
- graphite2=1.3.13=h58526e2_1001
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- harfbuzz=8.2.1=h3d44ed6_0
- hdf5=1.10.4=nompi_h3c11f04_1106
- hhsuite=3.3.0=py39pl5262h8f06ca0_2
- htslib=1.9=h4da6232_3
- icu=73.2=h59595ed_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.8.0=pyha770c72_0
- importlib-resources=6.1.1=pyhd8ed1ab_0
- importlib_resources=6.1.1=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- ipython=8.17.2=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.1.1=pyhd8ed1ab_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.3.2=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- json5=0.9.14=pyhd8ed1ab_0
- jsonschema=4.19.2=pyhd8ed1ab_0
- jsonschema-specifications=2023.7.1=pyhd8ed1ab_0
- jupyter=1.0.0=py39h06a4308_7
- jupyter_client=7.4.9=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.5.0=py39hf3d152e_0
- jupyter_server=1.24.0=pyhd8ed1ab_0
- jupyterlab=3.3.2=pyhd3eb1b0_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.25.1=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.9=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py39h7633fee_1
- krb5=1.20.1=h81ceb04_0
- lame=3.100=h166bdaf_1003
- lcms2=2.15=hfd0df8a_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=3.0=h295c915_0
- libass=0.17.1=h8fe9dca_1
- libblas=3.9.0=3_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=3_openblas
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcups=2.3.3=h36d4200_3
- libcurl=7.88.1=hdc1c0ab_1
- libdeflate=1.17=h5eee18b_1
- libdrm=2.4.114=h166bdaf_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=13.2.0=h807b86a_2
- libgfortran-ng=7.5.0=h14aa051_20
- libgfortran4=7.5.0=h14aa051_20
- libglib=2.78.1=hebfc3b9_0
- libhwloc=2.9.3=default_h554bfaf_1009
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=3_openblas
- liblapacke=3.9.0=3_openblas
- libllvm14=14.0.6=hcd5def8_4
- libnghttp2=1.58.0=h47da74e_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.12=pthreads_hb3c22a3_1
- libopus=1.3.1=h7f98852_1
- libpciaccess=0.17=h166bdaf_0
- libpng=1.6.39=h753d276_0
- libpq=12.15=hdbd6064_1
- libprotobuf=3.21.12=hfc55251_2
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.44.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_2
- libtasn1=4.19.0=h166bdaf_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libva=2.20.0=hd590300_0
- libvpx=1.13.1=h59595ed_0
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxkbcommon=1.6.0=h5d7e998_0
- libxml2=2.11.5=h232c23b_1
- libzlib=1.2.13=hd590300_5
- llvm-openmp=17.0.4=h4dfa4b3_0
- markupsafe=2.1.3=py39hd1e30aa_1
- matplotlib-base=3.8.1=py39he9076e7_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- mkl=2022.2.1=h84fe81f_16997
- mpi=1.0=mpich
- mpich=3.3.2=hc856adb_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql=5.7.24=h721c034_2
- nbclassic=0.5.6=pyhb4ecaf3_1
- nbclient=0.8.0=pyhd8ed1ab_0
- nbconvert=7.11.0=pyhd8ed1ab_0
- nbconvert-core=7.11.0=pyhd8ed1ab_0
- nbconvert-pandoc=7.11.0=pyhd8ed1ab_0
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=h59595ed_2
- nettle=3.8.1=hc379101_1
- ninja=1.11.1=h924138e_0
- nomkl=3.0=0
- notebook=6.5.6=pyha770c72_0
- notebook-shim=0.2.3=pyhd8ed1ab_0
- numexpr=2.8.7=py39hb68c0d3_104
- numpy=1.22.4=py39hc58783e_0
- openh264=2.3.1=hcb278e6_2
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.1.4=hd590300_0
- p11-kit=0.24.1=hc5aa10d_0
- packaging=23.2=pyhd8ed1ab_0
- pandas=1.4.2=py39h295c915_0
- pandoc=3.1.3=h32600fe_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pbbam=0.23.0=h88345a9_0
- pbdagcon=0.1=boost1.60_0
- pcre2=10.40=hc3806b6_0
- perl=5.26.2=h36c2ea0_1008
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=10.0.1=py39ha6cbd5a_0
- pixman=0.42.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- pluggy=1.3.0=pyhd8ed1ab_0
- ply=3.11=py_1
- prometheus_client=0.18.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.39=pyha770c72_0
- prompt_toolkit=3.0.39=hd8ed1ab_0
- psutil=5.9.5=py39hd1e30aa_1
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- py=1.11.0=pyh6c4a22f_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.16.1=pyhd8ed1ab_0
- pyqt=5.15.10=py39h6a678d5_0
- pyqt5-sip=12.13.0=py39h5eee18b_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.1.1=py39h06a4308_0
- python=3.9.18=h0755675_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.18.1=pyhd8ed1ab_0
- python-levenshtein=0.12.2=py39h27cfd23_0
- python_abi=3.9=4_cp39
- pytorch=1.12.1=cpu_py39h3439074_1
- pytorch-mutex=1.0=cuda
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyzmq=24.0.1=py39headdf64_1
- qt-main=5.15.2=h53bd1ea_10
- qtconsole=5.5.0=pyhd8ed1ab_0
- qtconsole-base=5.5.0=pyha770c72_0
- qtpy=2.4.1=pyhd8ed1ab_0
- readline=8.2=h8228510_1
- referencing=0.30.2=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- rpds-py=0.12.0=py39h9fdd4d6_0
- scikit-learn=1.0.2=py39h51133e4_1
- scikit-learn-intelex=2021.5.0=py39h06a4308_0
- scipy=1.5.3=py39hf3f25e7_0
- seaborn=0.13.0=hd8ed1ab_0
- seaborn-base=0.13.0=pyhd8ed1ab_0
- send2trash=1.8.2=pyh41d4057_0
- sip=6.7.12=py39h3d6467e_0
- six=1.16.0=pyh6c4a22f_0
- sleef=3.5.1=h9b69904_2
- sniffio=1.3.0=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- sqlite=3.44.0=h2c6b66d_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.14.0=py39h44dd56e_2
- svt-av1=1.7.0=h59595ed_0
- tbb=2021.10.0=h00ab1b0_2
- terminado=0.17.1=pyh41d4057_0
- threadpoolctl=3.2.0=pyha21a80b_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tomli=2.0.1=pyhd8ed1ab_0
- torchaudio=0.12.1=py39_cu116
- torchvision=0.13.1=py39_cu116
- tornado=6.3.3=py39hd1e30aa_1
- tqdm=4.64.0=py39h06a4308_0
- traitlets=5.13.0=pyhd8ed1ab_0
- typing-extensions=4.8.0=hd8ed1ab_0
- typing_extensions=4.8.0=pyha770c72_0
- tzdata=2023c=h71feb2d_0
- unicodedata2=15.1.0=py39hd1e30aa_0
- urllib3=1.26.18=pyhd8ed1ab_0
- wcwidth=0.2.9=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- wheel=0.41.3=pyhd8ed1ab_0
- widgetsnbextension=4.0.9=pyhd8ed1ab_0
- x264=1!164.3095=h166bdaf_2
- x265=3.5=h924138e_3
- xkeyboard-config=2.40=hd590300_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.7=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.10=h5eee18b_1
- zeromq=4.3.5=h59595ed_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- absl-py==1.0.0
- aiohttp==3.8.1
- aiosignal==1.2.0
- astroid==3.0.1
- async-timeout==4.0.2
- billiard==4.1.0
- black==22.6.0
- bokeh==3.3.0
- boto3==1.21.38
- botocore==1.24.38
- cached-property==1.5.2
- cachetools==5.0.0
- calmsize==0.1.3
- cerberus==1.3.4
- cfgv==3.3.1
- click==8.1.3
- colorama==0.4.5
- cssutils==2.7.1
- dataframe-image==0.2.0
- dill==0.3.7
- distlib==0.3.6
- docopt==0.6.2
- evcouplings==0.1.1
- fair-esm==0.4.2
- filelock==3.6.0
- frozenlist==1.3.0
- fsspec==2022.2.0
- future==0.18.2
- google-auth==2.6.2
- google-auth-oauthlib==0.4.6
- grpcio==1.44.0
- html2image==2.0.4.3
- huggingface-hub==0.17.3
- identify==2.5.3
- ipykernel==6.9.2
- isort==5.10.1
- jmespath==1.0.0
- lazy-object-proxy==1.7.1
- llvmlite==0.41.0
- lmdb==1.3.0
- logomaker==0.8
- markdown==3.3.6
- mccabe==0.6.1
- mmtf-python==1.1.3
- msgpack==1.0.7
- multidict==6.0.2
- mypy-extensions==0.4.3
- nest-asyncio==1.5.4
- nodeenv==1.7.0
- numba==0.58.0
- oauthlib==3.2.0
- opt-einsum==3.3.0
- pathspec==0.9.0
- pep517==0.13.0
- pip==23.2.1
- pip-api==0.0.30
- pipreqs==0.4.11
- platformdirs==2.5.1
- plette==0.2.3
- pre-commit==2.20.0
- protobuf==3.19.4
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pydeprecate==0.3.1
- pygraphviz==1.9
- pylint==3.0.2
- pyparsing==2.4.7
- pyro-api==0.1.2
- pyro-ppl==1.8.2
- pytest-pylint==0.21.0
- python-graphviz==0.20.1
- pytorch-memlab==0.2.4
- pyyaml==6.0
- regex==2023.10.3
- requests-oauthlib==1.3.1
- requirementslib==2.0.1
- rsa==4.8
- ruamel-yaml==0.17.35
- ruamel-yaml-clib==0.2.8
- s3transfer==0.5.2
- safetensors==0.4.0
- sentencepiece==0.1.99
- sequence-models==1.7.0
- setuptools==59.5.0
- sklearn==0.0.post10
- tape-proteins==0.5
- tensorboard==2.8.0
- tensorboard-data-server==0.6.1
- tensorboard-plugin-wit==1.8.1
- tensorboardx==2.5
- tokenize-rt==5.2.0
- tokenizers==0.14.1
- toml==0.10.2
- tomlkit==0.11.4
- torch-summary==1.4.5
- torchmetrics==0.7.2
- transformers==4.34.1
- virtualenv==20.16.4
- vistir==0.6.1
- websocket-client==1.6.2
- werkzeug==2.0.3
- wrapt==1.13.3
- xyzservices==2023.10.0
- yapf==0.32.0
- yarg==0.1.9
- yarl==1.7.2
prefix: /home/vikram/anaconda3/envs/FLIGHTED