From 1e175c9f2ed53036eab6dd0d8843202c6f63946c Mon Sep 17 00:00:00 2001
From: Jovan Veljanoski <jovan.veljanoski@tiqets.com>
Date: Wed, 7 Feb 2024 16:38:03 +0100
Subject: [PATCH 01/91] fix[ml]: adjust tests to reflect latest apis of 3rd
 party libraries (xgboost, lightgbm)

---
 ci/conda-env.yml                     |  2 +-
 packages/vaex-ml/vaex/ml/lightgbm.py | 13 +++++++++----
 tests/ml/xgboost_test.py             |  5 +----
 3 files changed, 11 insertions(+), 9 deletions(-)

diff --git a/ci/conda-env.yml b/ci/conda-env.yml
index 635349147b..34138c94d7 100644
--- a/ci/conda-env.yml
+++ b/ci/conda-env.yml
@@ -20,7 +20,7 @@ dependencies:
 - h5py
 - httpx # for testing with starlette/fastapi
 - ipyvolume=0.6.0a6
-- lightgbm
+- lightgbm>=4.0.0
 - matplotlib-base
 - nest-asyncio<1.5.2
 - notebook
diff --git a/packages/vaex-ml/vaex/ml/lightgbm.py b/packages/vaex-ml/vaex/ml/lightgbm.py
index 5fb83ea458..4dbec9d42f 100644
--- a/packages/vaex-ml/vaex/ml/lightgbm.py
+++ b/packages/vaex-ml/vaex/ml/lightgbm.py
@@ -86,7 +86,7 @@ def transform(self, df):
         copy.add_virtual_column(self.prediction_name, expression, unique=False)
         return copy
 
-    def fit(self, df, valid_sets=None, valid_names=None, early_stopping_rounds=None, evals_result=None, verbose_eval=None, **kwargs):
+    def fit(self, df, valid_sets=None, valid_names=None, early_stopping_rounds=None, evals_result=None, verbose_eval=False, **kwargs):
         """Fit the LightGBMModel to the DataFrame.
 
         The model will train until the validation score stops improving.
@@ -112,14 +112,19 @@ def fit(self, df, valid_sets=None, valid_names=None, early_stopping_rounds=None,
         else:
             valid_sets = ()
 
+        callbacks = [
+            lightgbm.callback.record_evaluation(eval_result=evals_result) if evals_result is not None else None,
+            lightgbm.callback.early_stopping(stopping_rounds=early_stopping_rounds) if early_stopping_rounds else None,
+            lightgbm.callback.log_evaluation() if verbose_eval else None
+        ]
+        callbacks = [callback for callback in callbacks if callback is not None]
+
         self.booster = lightgbm.train(params=self.params,
                                       train_set=dtrain,
                                       num_boost_round=self.num_boost_round,
                                       valid_sets=valid_sets,
                                       valid_names=valid_names,
-                                      early_stopping_rounds=early_stopping_rounds,
-                                      evals_result=evals_result,
-                                      verbose_eval=verbose_eval,
+                                      callbacks=callbacks,
                                       **kwargs)
 
     def predict(self, df, **kwargs):
diff --git a/tests/ml/xgboost_test.py b/tests/ml/xgboost_test.py
index 9a1a5dd371..c9c264db98 100644
--- a/tests/ml/xgboost_test.py
+++ b/tests/ml/xgboost_test.py
@@ -17,7 +17,6 @@
     'objective': 'multi:softmax',  # learning task objective
     'num_class': 3,           # number of target classes (if classification)
     'random_state': 42,       # fixes the seed, for reproducibility
-    'silent': 1,              # silent mode
     'n_jobs': -1              # cpu cores used
     }
 
@@ -32,14 +31,13 @@
     'min_child_weight': 1,      # minimum sum of instance weight (hessian) needed in a child
     'objective': 'reg:linear',  # learning task objective
     'random_state': 42,         # fixes the seed, for reproducibility
-    'silent': 1,                # silent mode
     'n_jobs': -1                # cpu cores used
     }
 
 
 def test_xgboost(df_iris):
     ds = df_iris
-    ds_train, ds_test = ds.ml.train_test_split(test_size=0.2, verbose=False)
+    ds_train, ds_test = ds.ml.train_test_split(test_size=0.1, verbose=False)
     features = ['sepal_length', 'sepal_width', 'petal_length', 'petal_width']
     booster = vaex.ml.xgboost.XGBoostModel(num_boost_round=10,
                                            params=params_multiclass,
@@ -104,7 +102,6 @@ def test_xgboost_validation_set(df_example):
     # fit the booster - including saving the history of the validation sets
     booster.fit(train, evals=[(train, 'train'), (test, 'test')],
                 early_stopping_rounds=2, evals_result=history)
-    assert booster.booster.best_ntree_limit == 10
     assert booster.booster.best_iteration == 9
     assert len(history['train']['rmse']) == 10
     assert len(history['test']['rmse']) == 10

From 8ea928d060f870512f8815111afbea8dbd3185f3 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 07:28:44 +0100
Subject: [PATCH 02/91] Build wheels on pull_request

---
 .github/workflows/wheel.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 8d27f3e9f2..50696cdd82 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -4,6 +4,7 @@ on:
   push:
     tags:
       - core-*
+  pull_request:
 
 jobs:
   build_wheels:

From a210a40e49d18b5790847f15794d56db126a3187 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 07:26:36 +0100
Subject: [PATCH 03/91] Maximize wheel build parallellization

---
 .github/workflows/wheel.yml | 106 ++++++++++++++++++++----------------
 packages/vaex-core/setup.py |   2 +
 2 files changed, 61 insertions(+), 47 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 50696cdd82..fee851602f 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -7,84 +7,96 @@ on:
   pull_request:
 
 jobs:
+  build_wheels_matrix:
+    runs-on: ubuntu-latest
+    outputs:
+      include: ${{ steps.set-matrix.outputs.include }}
+
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          submodules: true
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.x"
+
+      - run: pip install cibuildwheel==2.12.0
+
+      - id: set-matrix
+        run: |
+          MATRIX_INCLUDE=$(
+            {
+              cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | grep cp |  jq -Rc '{"only": ., "os": "ubuntu-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64,arm64 | grep cp |  jq -Rc '{"only": ., "os": "macos-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform windows --arch x86,AMD64 | grep cp |  jq -Rc '{"only": ., "os": "windows-latest"}'
+            } | jq -sc
+          )
+          echo "include=$MATRIX_INCLUDE" >> $GITHUB_OUTPUT
+          cat $GITHUB_OUTPUT
+        working-directory: packages/vaex-core/
+
   build_wheels:
-    name: Build wheel on ${{ matrix.os }}
+    needs: build_wheels_matrix
     runs-on: ${{ matrix.os }}
+    name: Build ${{ matrix.only }}
+
     strategy:
-      fail-fast: false
       matrix:
-        os: [ubuntu-20.04, macOS-11, windows-latest]
-        python-version: [36, 37, 38, 39, 310]
+        include: ${{ fromJson(needs.build_wheels_matrix.outputs.include) }}
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v3
       with:
         submodules: true
 
     - name: Copy dll
-      if: (matrix.os == 'windows-latest')
+      if: matrix.os == 'windows-latest'
       uses: ./ci/actions/windll
 
-    - uses: actions/setup-python@v2
-      name: Install Python
-      with:
-        python-version: '3.7'
-
-    - name: Install cibuildwheel
-      run: |
-        python -m pip install cibuildwheel==2.8.1
-
-    - name: Install twine/wheel
-      run: |
-        python -m pip install twine wheel
-
     - name: chores
       if: matrix.os != 'windows-latest'
       run: |
-        mkdir dist
         mkdir packages/vaex-core/bin
         cp bin/install_pcre.sh packages/vaex-core/bin/
 
-    - name: Build vaex-core (windows)
-      if: (matrix.os == 'windows-latest')
-      env:
-        CIBW_BUILD: cp${{ matrix.python-version }}*64
-        CIBW_ENVIRONMENT_LINUX: "CFLAGS='-Wl,-strip-all' CXXFLAGS='-Wl,-strip-all'"
-      run: |
-        python -m cibuildwheel --output-dir dist packages/vaex-core
+    - name: Set up QEMU
+      if: runner.os == 'Linux'
+      uses: docker/setup-qemu-action@v2
 
-    - name: Build vaex-core (linux, osx)
-      if: (matrix.os != 'windows-latest')
+    - uses: pypa/cibuildwheel@v2.12.0
+      with:
+        only: ${{ matrix.only }}
+        package-dir: packages/vaex-core/
+        output-dir: packages/vaex-core/dist/
       env:
-        CIBW_BEFORE_BUILD: bin/install_pcre.sh
-        CIBW_BUILD: "cp${{ matrix.python-version }}*64 cp${{ matrix.python-version }}-macosx-*"
-        CIBW_ENVIRONMENT_LINUX: "CFLAGS='-Wl,-strip-all' CXXFLAGS='-Wl,-strip-all'"
+        CIBW_BEFORE_BUILD: ${{ matrix.os == 'windows-latest' && '' || 'bin/install_pcre.sh' }}
         CIBW_BUILD_VERBOSITY: 2
-        # needed for m1 builds
+        CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
+        CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28
+        CIBW_ENVIRONMENT_LINUX: "CFLAGS='-Wl,-strip-all' CXXFLAGS='-Wl,-strip-all'"
         CIBW_ENVIRONMENT_MACOS: "CFLAGS='-I/usr/local/include -L/usr/local/lib' CXXFLAGS='-I/usr/local/include -L/usr/local/lib' LDFLAGS='-L/usr/local/lib'"
-        CIBW_ARCHS_MACOS: "x86_64 arm64"
-      run: |
-        python -m cibuildwheel --output-dir dist packages/vaex-core
 
-    - name: Make source distribution
-      shell: bash
-      run: |
-          cd packages/vaex-core && python setup.py sdist
+    - uses: actions/setup-python@v4
+      with:
+        python-version: "3.x"
 
-    - name: Copy build artifacts
-      shell: bash
-      run: |
-          cp packages/vaex-core/dist/* dist/
+    - name: Make source distribution
+      run: python setup.py sdist
+      working-directory: packages/vaex-core/
 
-    - uses: actions/upload-artifact@v1
+    - uses: actions/upload-artifact@v3
       with:
         name: distributions
-        path: ./dist
+        path: packages/vaex-core/dist
 
     - name: Publish a Python distribution to PyPI
+      if: github.event_name == 'push'
       env:
         TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_core }}
       run: |
+        pip install twine wheel
         openssl sha256 dist/*
-        twine upload --skip-existing dist/vaex?core*
+        twine upload --skip-existing
+      working-directory: packages/vaex-core/
diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index b5c98c18ca..f590ee90b9 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -183,12 +183,14 @@ def __str__(self):
       include_package_data=True,
       ext_modules=([extension_vaexfast] if on_rtd else [extension_vaexfast, extension_strings, extension_superutils, extension_superagg]) if not use_skbuild else [],
       zip_safe=False,
+      python_requires=">=3.6",
       classifiers=[
             "Programming Language :: Python :: 3.6",
             "Programming Language :: Python :: 3.7",
             "Programming Language :: Python :: 3.8",
             "Programming Language :: Python :: 3.9",
             "Programming Language :: Python :: 3.10",
+            "Programming Language :: Python :: 3.11",
       ],
       extras_require={
           'all': ["gcsfs>=0.6.2", "s3fs"]

From 3395947bc12fe33ad2ed622b7c2feba80a6976a7 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 08:11:47 +0100
Subject: [PATCH 04/91] git submodule update --remote --merge
 packages/vaex-core/vendor/pybind11

---
 packages/vaex-core/vendor/pybind11 | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/vaex-core/vendor/pybind11 b/packages/vaex-core/vendor/pybind11
index 25abf7efba..a500f439d0 160000
--- a/packages/vaex-core/vendor/pybind11
+++ b/packages/vaex-core/vendor/pybind11
@@ -1 +1 @@
-Subproject commit 25abf7efba0b2990f5a6dfb0a31bc65c0f2f4d17
+Subproject commit a500f439d06d220ee2c680cdd2c8828eac8e7dfc

From b6c6925426166c5510607c35e80b937e9c1a31a1 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 08:17:15 +0100
Subject: [PATCH 05/91] Fix gcc error

---
 packages/vaex-core/src/superstring.hpp | 1 +
 1 file changed, 1 insertion(+)

diff --git a/packages/vaex-core/src/superstring.hpp b/packages/vaex-core/src/superstring.hpp
index b62d492bc2..924be203bc 100644
--- a/packages/vaex-core/src/superstring.hpp
+++ b/packages/vaex-core/src/superstring.hpp
@@ -3,6 +3,7 @@
 
 #include <nonstd/string_view.hpp>
 #include <string>
+#include <iostream>
 typedef nonstd::string_view string_view;
 typedef std::string string;
 #include <pybind11/numpy.h>

From 91343013a8721f283dc96ca2e2472b24f3794d1d Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 08:26:10 +0100
Subject: [PATCH 06/91] Fix workflow syntax

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index fee851602f..3d6ab3c5a5 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -70,7 +70,7 @@ jobs:
         package-dir: packages/vaex-core/
         output-dir: packages/vaex-core/dist/
       env:
-        CIBW_BEFORE_BUILD: ${{ matrix.os == 'windows-latest' && '' || 'bin/install_pcre.sh' }}
+        CIBW_BEFORE_BUILD: ${{ ( matrix.os != 'windows-latest' && 'bin/install_pcre.sh' ) || '' }}
         CIBW_BUILD_VERBOSITY: 2
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28

From 65e1fd8e866f5f354f32b1e3d34979012d97d841 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 08:44:18 +0100
Subject: [PATCH 07/91] Remove redefinition

https://github.com/pybind/pybind11/blob/769fd3b889fef6cddb060f2a0be26aee62b4da05/include/pybind11/pytypes.h#L859

https://github.com/ddelange/vaex/actions/runs/3965609112/jobs/6795506653#step:6:2110
---
 packages/vaex-core/src/hash_object.cpp | 9 ---------
 1 file changed, 9 deletions(-)

diff --git a/packages/vaex-core/src/hash_object.cpp b/packages/vaex-core/src/hash_object.cpp
index dfd99c8db4..a86287cc3a 100644
--- a/packages/vaex-core/src/hash_object.cpp
+++ b/packages/vaex-core/src/hash_object.cpp
@@ -13,15 +13,6 @@ typedef SSIZE_T ssize_t;
 
 namespace py = pybind11;
 
-namespace std {
-    template<>
-    struct hash<PyObject*> {
-        size_t operator()(const PyObject *const &o) const {
-            return PyObject_Hash((PyObject*)o);
-        }
-    };
-}
-
 namespace vaex {
 
 struct CompareObjects

From c1c15e68177e442bf0bc9d4e82e9958a758f3055 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 08:50:35 +0100
Subject: [PATCH 08/91] Disable win32

https://github.com/ddelange/vaex/actions/runs/3965689146/jobs/6795667118#step:6:538
---
 .github/workflows/wheel.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 3d6ab3c5a5..17e48dc090 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -27,9 +27,9 @@ jobs:
         run: |
           MATRIX_INCLUDE=$(
             {
-              cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | grep cp |  jq -Rc '{"only": ., "os": "ubuntu-latest"}' \
-              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64,arm64 | grep cp |  jq -Rc '{"only": ., "os": "macos-latest"}' \
-              && cibuildwheel --print-build-identifiers --platform windows --arch x86,AMD64 | grep cp |  jq -Rc '{"only": ., "os": "windows-latest"}'
+              cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | grep cp |  jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64,arm64 | grep cp |  jq -nRc '{"only": inputs, "os": "macos-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform windows --arch AMD64 | grep cp |  jq -nRc '{"only": inputs, "os": "windows-latest"}'
             } | jq -sc
           )
           echo "include=$MATRIX_INCLUDE" >> $GITHUB_OUTPUT

From 0d0b27231b85966967c6a78ba7b4d8d59c19ae82 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Jan 2023 09:15:43 +0100
Subject: [PATCH 09/91] Remove testing leftovers

---
 .github/workflows/wheel.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 17e48dc090..6e6ef8c063 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -4,7 +4,6 @@ on:
   push:
     tags:
       - core-*
-  pull_request:
 
 jobs:
   build_wheels_matrix:
@@ -91,7 +90,6 @@ jobs:
         path: packages/vaex-core/dist
 
     - name: Publish a Python distribution to PyPI
-      if: github.event_name == 'push'
       env:
         TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_core }}

From 7817433cb9501e2125c893c86f454303315aaa4d Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 1 Sep 2023 10:14:49 +0200
Subject: [PATCH 10/91] Add upper cap on lightgbm

https://github.com/microsoft/LightGBM/issues/5196#issuecomment-1702252267
---
 requirements-ml.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements-ml.txt b/requirements-ml.txt
index fde5372d8f..fc14ad510e 100644
--- a/requirements-ml.txt
+++ b/requirements-ml.txt
@@ -1,7 +1,7 @@
 annoy
 scikit-learn
 xgboost
-lightgbm
+lightgbm<4  # https://github.com/microsoft/LightGBM/issues/5196#issuecomment-1702252267
 catboost
 # tensorflow==2.1.0
 # tensorflow-io==0.12.0

From f556f569fff32552ecec5afcd8aa55706727d072 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Mon, 4 Sep 2023 10:28:00 +0200
Subject: [PATCH 11/91] Migrate to mamba-org/setup-micromamba@v1

---
 .github/workflows/pythonpackage.yml | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 45601d0199..22fab1c9b4 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -53,11 +53,12 @@ jobs:
         token: ${{ secrets.PAT_PULL_ENTERPRISE }}
         path: vaex-enterprise
     - name: install micromamba
-      uses: mamba-org/provision-with-micromamba@main
+      uses: mamba-org/setup-micromamba@v1
       with:
+        micromamba-version: 1.5.0-1
         environment-name: vaex-dev
         environment-file: ci/conda-env.yml
-        extra-specs: |
+        create-args: >-
             python=${{ matrix.python-version }}
     - name: Extra non-windows installs
       if: matrix.os != 'windows-latest'
@@ -206,11 +207,12 @@ jobs:
         path: ./dist
 
     - name: Install micromamba
-      uses: mamba-org/provision-with-micromamba@main
+      uses: mamba-org/setup-micromamba@v1
       with:
+        micromamba-version: 1.5.0-1
         environment-name: vaex-test
         environment-file: ci/conda-base-minimal.yml
-        extra-specs: |
+        create-args: >-
             python=${{ matrix.python-version }}
             pcre
             rich

From 34b0209fa09cb3cfd8e1c819f89ef447f4eb9d02 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Sat, 14 Oct 2023 11:07:28 +0300
Subject: [PATCH 12/91] Upload release assets on Github (pre)release

---
 .github/workflows/wheel.yml | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 6e6ef8c063..fb5cea7561 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -4,6 +4,9 @@ on:
   push:
     tags:
       - core-*
+  release:
+    types: [released, prereleased]
+  workflow_dispatch:  # allows running workflow manually from the Actions tab
 
 jobs:
   build_wheels_matrix:
@@ -63,7 +66,7 @@ jobs:
       if: runner.os == 'Linux'
       uses: docker/setup-qemu-action@v2
 
-    - uses: pypa/cibuildwheel@v2.12.0
+    - uses: pypa/cibuildwheel@v2.16.2
       with:
         only: ${{ matrix.only }}
         package-dir: packages/vaex-core/
@@ -76,6 +79,12 @@ jobs:
         CIBW_ENVIRONMENT_LINUX: "CFLAGS='-Wl,-strip-all' CXXFLAGS='-Wl,-strip-all'"
         CIBW_ENVIRONMENT_MACOS: "CFLAGS='-I/usr/local/include -L/usr/local/lib' CXXFLAGS='-I/usr/local/include -L/usr/local/lib' LDFLAGS='-L/usr/local/lib'"
 
+    - name: Upload release assets
+      if: github.event_name == 'release'
+      uses: softprops/action-gh-release@v0.1.15
+      with:
+        files: packages/vaex-core/dist/*
+
     - uses: actions/setup-python@v4
       with:
         python-version: "3.x"

From 857350225c81710ed7cce9c369bdc80b558ad9a7 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Sat, 14 Oct 2023 11:33:20 +0300
Subject: [PATCH 13/91] Add missing permission for release assets

---
 .github/workflows/wheel.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index fb5cea7561..339de37d97 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -44,9 +44,13 @@ jobs:
     name: Build ${{ matrix.only }}
 
     strategy:
+      fail-fast: false
       matrix:
         include: ${{ fromJson(needs.build_wheels_matrix.outputs.include) }}
 
+    permissions:
+      contents: write # for uploading release assets
+
     steps:
     - uses: actions/checkout@v3
       with:

From b614cd3500a238a130c8566a5c51a306af11e7f3 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Wed, 18 Oct 2023 22:46:42 +0300
Subject: [PATCH 14/91] Build cp312 wheels

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 339de37d97..17db63b625 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -23,7 +23,7 @@ jobs:
         with:
           python-version: "3.x"
 
-      - run: pip install cibuildwheel==2.12.0
+      - run: pip install cibuildwheel~=2.16
 
       - id: set-matrix
         run: |

From 39eed152888f281bb0d822f3206f630cfcc03275 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 19 Oct 2023 09:29:34 +0300
Subject: [PATCH 15/91] Remove setuptools and wheel from pyproject.toml

---
 packages/vaex-core/pyproject.toml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/packages/vaex-core/pyproject.toml b/packages/vaex-core/pyproject.toml
index 64ee8280fb..df5666945b 100644
--- a/packages/vaex-core/pyproject.toml
+++ b/packages/vaex-core/pyproject.toml
@@ -1,8 +1,6 @@
 [build-system]
 # Minimum requirements for the build system to execute.
 requires = [
-    "setuptools",
-    "wheel",
     "oldest-supported-numpy",
     "scikit-build",
     "cmake",

From 0e37c401e271c1e60d071e3f8b08e05b503eaeb3 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 20 Oct 2023 11:14:02 +0200
Subject: [PATCH 16/91] Replace imp with importlib

---
 bin/webveax                           | 6 +++---
 docs/source/conf.py                   | 4 ++--
 packages/vaex-arrow/setup.py          | 4 ++--
 packages/vaex-astro/setup.py          | 4 ++--
 packages/vaex-contrib/setup.py        | 4 ++--
 packages/vaex-core/setup.py           | 4 ++--
 packages/vaex-core/vaex/expression.py | 4 ++--
 packages/vaex-graphql/setup.py        | 4 ++--
 packages/vaex-hdf5/setup.py           | 4 ++--
 packages/vaex-jupyter/setup.py        | 4 ++--
 packages/vaex-meta/setup.py           | 4 ++--
 packages/vaex-ml/setup.py             | 4 ++--
 packages/vaex-server/setup.py         | 4 ++--
 packages/vaex-ui/setup.py             | 4 ++--
 packages/vaex-ui/vaex/ui/main.py      | 6 +++---
 packages/vaex-viz/setup.py            | 4 ++--
 py2app.py                             | 4 ++--
 17 files changed, 36 insertions(+), 36 deletions(-)

diff --git a/bin/webveax b/bin/webveax
index 43146b6a99..0a694002e1 100644
--- a/bin/webveax
+++ b/bin/webveax
@@ -12,10 +12,10 @@ import sys
 import time
 import itertools
 import platform
+from importlib.machinery import SourceFileLoader
 
 
 import vaex.dataset
-import imp
 
 
 #import matplotlib
@@ -57,7 +57,7 @@ custom_module = None
 for path in path_list:
 	if os.path.exists(path):
 		print "loading", path
-		custom_module = imp.load_source('vaex.web.custom', path)
+		custom_module = SourceFileLoader('vaex.web.custom', path).load_module()
 	else:
 		print >>sys.stderr, path, "does not exist"
 if custom_module:
@@ -244,4 +244,4 @@ def api_density_xy(name, x, y=None):
 if __name__ == '__main__':
 	#flask.url_for('static', filename='test.html')
 	app.run(host='0.0.0.0')
-	#api_density_xy("Aq-A-2-999-shuffled-1percent", "x", "y")
\ No newline at end of file
+	#api_density_xy("Aq-A-2-999-shuffled-1percent", "x", "y")
diff --git a/docs/source/conf.py b/docs/source/conf.py
index be71f4a956..622638d292 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -89,7 +89,7 @@
 	print("failed finding vaex module, try finding version")
 	import sys
 	import os
-	import imp
+	from importlib.machinery import SourceFileLoader
 
 	def system(cmd):
 		print("Executing: ", cmd)
@@ -102,7 +102,7 @@ def system(cmd):
 	if not os.path.exists(path_version_file):
 		system("version=`git describe --tags --long`; python/vaex/vaex/setversion.py ${version}")
 
-	version = imp.load_source('version', path_version_file)
+	version = SourceFileLoader('version', path_version_file).load_module()
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
diff --git a/packages/vaex-arrow/setup.py b/packages/vaex-arrow/setup.py
index d12bf8b7c0..5cd9f033b7 100644
--- a/packages/vaex-arrow/setup.py
+++ b/packages/vaex-arrow/setup.py
@@ -1,10 +1,10 @@
 import os
-import imp
 from setuptools import setup
+from importlib.machinery import SourceFileLoader
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, "vaex_arrow/_version.py")
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 
 name = 'vaex'
diff --git a/packages/vaex-astro/setup.py b/packages/vaex-astro/setup.py
index 7556cda2fa..26006116e3 100644
--- a/packages/vaex-astro/setup.py
+++ b/packages/vaex-astro/setup.py
@@ -1,10 +1,10 @@
 import os
-import imp
 from setuptools import setup
+from importlib.machinery import SourceFileLoader
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/astro/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name        = 'vaex'
 author      = 'Maarten A. Breddels'
diff --git a/packages/vaex-contrib/setup.py b/packages/vaex-contrib/setup.py
index 2aba0a1c3f..61edc62354 100644
--- a/packages/vaex-contrib/setup.py
+++ b/packages/vaex-contrib/setup.py
@@ -1,10 +1,10 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/contrib/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name        = 'vaex'
 license     = 'MIT'
diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index f590ee90b9..7d04fb3e04 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -1,7 +1,7 @@
 from setuptools import setup
 import sys
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import Extension
 import platform
 
@@ -15,7 +15,7 @@
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, "vaex/core/_version.py")
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name = 'vaex'
 author = "Maarten A. Breddels"
diff --git a/packages/vaex-core/vaex/expression.py b/packages/vaex-core/vaex/expression.py
index 3e36e42dea..a795a17000 100644
--- a/packages/vaex-core/vaex/expression.py
+++ b/packages/vaex-core/vaex/expression.py
@@ -1138,7 +1138,7 @@ def jit_pythran(self, verbose=False):
             if not verbose:
                 logger.setLevel(logging.ERROR)
             import pythran
-            import imp
+            from importlib.machinery import SourceFileLoader
             import hashlib
             # self._import_all(module)
             names = []
@@ -1165,7 +1165,7 @@ def f({0}):
             # print(m.hexdigest())
             module_path = pythran.compile_pythrancode(module_name, code, extra_compile_args=["-DBOOST_SIMD", "-march=native"] + [] if verbose else ["-w"])
 
-            module = imp.load_dynamic(module_name, module_path)
+            module = SourceFileLoader(module_name, module_path).load_module()
             function_name = "f_" + m.hexdigest()
             function = self.ds.add_function(function_name, module.f, unique=True)
 
diff --git a/packages/vaex-graphql/setup.py b/packages/vaex-graphql/setup.py
index c0e73d3162..8a6e8a0860 100644
--- a/packages/vaex-graphql/setup.py
+++ b/packages/vaex-graphql/setup.py
@@ -1,10 +1,10 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/graphql/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name        = 'vaex'
 author      = 'Maarten A. Breddels'
diff --git a/packages/vaex-hdf5/setup.py b/packages/vaex-hdf5/setup.py
index 83c0fb74d9..b21f664df5 100644
--- a/packages/vaex-hdf5/setup.py
+++ b/packages/vaex-hdf5/setup.py
@@ -1,11 +1,11 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 from setuptools import Extension
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, "vaex/hdf5/_version.py")
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name = 'vaex'
 author = "Maarten A. Breddels"
diff --git a/packages/vaex-jupyter/setup.py b/packages/vaex-jupyter/setup.py
index 14a88ab5f6..467f4b375b 100644
--- a/packages/vaex-jupyter/setup.py
+++ b/packages/vaex-jupyter/setup.py
@@ -1,11 +1,11 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 from setuptools import Extension
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/jupyter/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 
 name = 'vaex'
diff --git a/packages/vaex-meta/setup.py b/packages/vaex-meta/setup.py
index 407578e97b..7b103103a0 100644
--- a/packages/vaex-meta/setup.py
+++ b/packages/vaex-meta/setup.py
@@ -1,11 +1,11 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 from setuptools import Extension
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/meta/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 
 name = 'vaex'
diff --git a/packages/vaex-ml/setup.py b/packages/vaex-ml/setup.py
index e2a19be820..07e76a82ea 100644
--- a/packages/vaex-ml/setup.py
+++ b/packages/vaex-ml/setup.py
@@ -1,10 +1,10 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/ml/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name        = 'vaex'
 author      = 'Jovan Veljanoski'
diff --git a/packages/vaex-server/setup.py b/packages/vaex-server/setup.py
index 2470e88b5e..37916d450c 100644
--- a/packages/vaex-server/setup.py
+++ b/packages/vaex-server/setup.py
@@ -1,11 +1,11 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 from setuptools import Extension
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, 'vaex/server/_version.py')
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 
 name = 'vaex'
diff --git a/packages/vaex-ui/setup.py b/packages/vaex-ui/setup.py
index 09ec130b08..401942eb6f 100644
--- a/packages/vaex-ui/setup.py
+++ b/packages/vaex-ui/setup.py
@@ -1,11 +1,11 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 from setuptools import Extension
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, "vaex/ui/_version.py")
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 name = 'vaex'
 author = "Maarten A. Breddels"
diff --git a/packages/vaex-ui/vaex/ui/main.py b/packages/vaex-ui/vaex/ui/main.py
index a1d44cb119..83716cf023 100644
--- a/packages/vaex-ui/vaex/ui/main.py
+++ b/packages/vaex-ui/vaex/ui/main.py
@@ -76,7 +76,7 @@ def getfilesystemencoding_wrapper():
 # import subspacefind
 # import ctypes
 
-import imp
+from importlib.machinery import SourceFileLoader
 
 import logging
 logger = logging.getLogger("vaex")
@@ -92,7 +92,7 @@ def getfilesystemencoding_wrapper():
 custompath = path = os.path.expanduser('~/.vaex/custom.py')
 # print path
 if os.path.exists(path):
-    customModule = imp.load_source('vaex.custom', path)
+    customModule = SourceFileLoader('vaex.custom', path).load_module()
     # custom = customModule.Custom()
 else:
     custom = None
@@ -1164,7 +1164,7 @@ def do(ignore=None, dim=dim, N=N, power=power, name=name):
                     logger.debug("plugin file: %s" % path)
                     filename = os.path.basename(path)
                     name = os.path.splitext(filename)[0]
-                    imp.load_source('vaexuser.plugin.' + name, path)
+                    SourceFileLoader('vaexuser.plugin.' + name, path).load_module()
 
         self.open_generators = []  # for reference counts
         self.action_open_hdf5_gadget.triggered.connect(self.openGenerator(self.gadgethdf5, "Gadget HDF5 file", "*.hdf5"))
diff --git a/packages/vaex-viz/setup.py b/packages/vaex-viz/setup.py
index d824616093..e803574a0a 100644
--- a/packages/vaex-viz/setup.py
+++ b/packages/vaex-viz/setup.py
@@ -1,10 +1,10 @@
 import os
-import imp
+from importlib.machinery import SourceFileLoader
 from setuptools import setup
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, "vaex/viz/_version.py")
-version = imp.load_source('version', path_version)
+version = SourceFileLoader('version', path_version).load_module()
 
 
 name = 'vaex'
diff --git a/py2app.py b/py2app.py
index 4abc694cd8..c740d49b72 100644
--- a/py2app.py
+++ b/py2app.py
@@ -12,7 +12,7 @@
 from setuptools import setup, Extension
 import platform
 import sys
-import imp
+from importlib.machinery import SourceFileLoader
 
 def system(cmd):
 	print("Executing: ", cmd)
@@ -25,7 +25,7 @@ def system(cmd):
 if not os.path.exists(path_version_file):
 	system("version=`git describe --tags --long`; vaex/setversion.py ${version}")
 
-version = imp.load_source('version', path_version_file)
+version = SourceFileLoader('version', path_version_file).load_module()
 #system("version=`git describe --tags --long`; vaex/vaex/setversion.py ${version}")
 
 

From 63acdb6aac5b00f6ffac7e0987c6079e02cfd0e0 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 7 Feb 2024 09:17:47 +0100
Subject: [PATCH 17/91] chore: trigger ci


From ba4943b4d93050354582bc95c355bedd54f286fd Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 7 Feb 2024 09:38:22 +0100
Subject: [PATCH 18/91] ci: upgrade xcode for brew install libomp

---
 .github/workflows/pythonpackage.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 22fab1c9b4..1faa736cec 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -42,7 +42,7 @@ jobs:
       # alternative would be to upgrade tapi to 1100.0.11, we can possibly remove this in the future
       if: matrix.os == 'macOS-11'
       with:
-        xcode-version: "11.7.0"
+        xcode-version: "13.2.1"
     - uses: actions/checkout@v2
       with:
         submodules: true

From a346454e08e2f7b68daf88b647d202a5494b3767 Mon Sep 17 00:00:00 2001
From: Jovan Veljanoski <jovan.veljanoski@tiqets.com>
Date: Fri, 9 Feb 2024 13:30:01 +0100
Subject: [PATCH 19/91] update requirements-ml to comply with the latest
 veex-ml expectations.

---
 requirements-ml.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements-ml.txt b/requirements-ml.txt
index fc14ad510e..b4ab89ed63 100644
--- a/requirements-ml.txt
+++ b/requirements-ml.txt
@@ -1,7 +1,7 @@
 annoy
 scikit-learn
 xgboost
-lightgbm<4  # https://github.com/microsoft/LightGBM/issues/5196#issuecomment-1702252267
+lightgbm>4
 catboost
 # tensorflow==2.1.0
 # tensorflow-io==0.12.0

From d7023a7fbe551841028e265c6eea52db02d287c8 Mon Sep 17 00:00:00 2001
From: Jovan Veljanoski <jovan.veljanoski@tiqets.com>
Date: Fri, 9 Feb 2024 15:30:53 +0100
Subject: [PATCH 20/91] try to install lightgbm via pip

---
 ci/conda-env.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/ci/conda-env.yml b/ci/conda-env.yml
index 34138c94d7..2cdf9d5a21 100644
--- a/ci/conda-env.yml
+++ b/ci/conda-env.yml
@@ -20,7 +20,6 @@ dependencies:
 - h5py
 - httpx # for testing with starlette/fastapi
 - ipyvolume=0.6.0a6
-- lightgbm>=4.0.0
 - matplotlib-base
 - nest-asyncio<1.5.2
 - notebook
@@ -54,3 +53,5 @@ dependencies:
 - python-utils
 - progressbar2
 - zipp<3.16.0
+- pip:
+  - lightgbm>=4.0.0
\ No newline at end of file

From 021e60f5de638bdec12a6fbe64e3841375abe3f6 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Tue, 13 Feb 2024 09:27:48 +0100
Subject: [PATCH 21/91] fix: only the mini taxi file is on s3 for cost savings

---
 docs/source/datasets.ipynb          | 4 ++--
 packages/vaex-core/vaex/__init__.py | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/docs/source/datasets.ipynb b/docs/source/datasets.ipynb
index dc9774db35..9795f60f6d 100644
--- a/docs/source/datasets.ipynb
+++ b/docs/source/datasets.ipynb
@@ -31,13 +31,13 @@
     "One can also stream the data directly from S3. Only the data that is necessary will be streamed, and it will cached locally:\n",
     "```\n",
     "import vaex\n",
-    "df = vaex.open('s3://vaex/taxi/yellow_taxi_2015_f32s.hdf5?anon=true')\n",
+    "df = vaex.open('s3://vaex/taxi/nyc_taxi_2015_mini.hdf5?anon=true')\n",
     "```"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {
     "ExecuteTime": {
      "end_time": "2020-06-04T13:46:26.924698Z",
diff --git a/packages/vaex-core/vaex/__init__.py b/packages/vaex-core/vaex/__init__.py
index 4190eb9f9e..5724d9b938 100644
--- a/packages/vaex-core/vaex/__init__.py
+++ b/packages/vaex-core/vaex/__init__.py
@@ -155,8 +155,8 @@ def open(path, convert=False, progress=None, shuffle=False, fs_options={}, fs=No
 
     Examples:
 
-    >>> df = vaex.open('s3://vaex/taxi/yellow_taxi_2015_f32s.hdf5', fs_options={{'anonymous': True}})
-    >>> df = vaex.open('s3://vaex/taxi/yellow_taxi_2015_f32s.hdf5?anon=true')
+    >>> df = vaex.open('s3://vaex/taxi/nyc_taxi_2015_mini.hdf5?anon=true', fs_options={{'anonymous': True}})
+    >>> df = vaex.open('s3://vaex/taxi/nyc_taxi_2015_mini.hdf5?anon=true?anon=true')
     >>> df = vaex.open('s3://mybucket/path/to/file.hdf5', fs_options={{'access_key': my_key, 'secret_key': my_secret_key}})
     >>> df = vaex.open(f's3://mybucket/path/to/file.hdf5?access_key={{my_key}}&secret_key={{my_secret_key}}')
     >>> df = vaex.open('s3://mybucket/path/to/file.hdf5?profile=myproject')

From a44e464ecb569fd7c7d90d5cb66858263a8e86ff Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 14 Feb 2024 13:09:52 +0100
Subject: [PATCH 22/91] ci: pin dask<2024.2.0 to get the same hash keys

This version gives different results, although
not a problem in production (it will make your
cache invalid though), for CI we test that we
have stable keys (fingerprints)
---
 ci/conda-env.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/ci/conda-env.yml b/ci/conda-env.yml
index 2cdf9d5a21..845b9f3088 100644
--- a/ci/conda-env.yml
+++ b/ci/conda-env.yml
@@ -10,6 +10,7 @@ dependencies:
 - cython
 - cachetools
 - catboost
+- dask<2024.2.0
 - diskcache
 - filelock
 - fsspec<2022.2.0

From 915d977edf3bda7d43fa18b3d2ad8fed22402ca9 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 14 Feb 2024 13:41:11 +0100
Subject: [PATCH 23/91] fix: only the mini taxi file is on s3 for cost savings
 (2)

---
 docs/source/tutorial.ipynb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/source/tutorial.ipynb b/docs/source/tutorial.ipynb
index 0772357c5e..039fea5f97 100644
--- a/docs/source/tutorial.ipynb
+++ b/docs/source/tutorial.ipynb
@@ -799,7 +799,7 @@
    ],
    "source": [
     "# Read in the NYC Taxi dataset straight from S3\n",
-    "nyctaxi = vaex.open('s3://vaex/taxi/yellow_taxi_2009_2015_f32.hdf5?anon=true')\n",
+    "nyctaxi = vaex.open('s3://vaex/taxi/nyc_taxi_2015_mini.hdf5?anon=true')\n",
     "nyctaxi.head(5)"
    ]
   },

From 658816d95f7775c4e1cf039000f9c1c50ddf4dbd Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 14 Feb 2024 15:31:27 +0100
Subject: [PATCH 24/91] ci: skip notebooks that depend on the dataframe server

---
 ci/05-run-notebooks.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/ci/05-run-notebooks.sh b/ci/05-run-notebooks.sh
index ccbd1bcab7..ba404e9673 100755
--- a/ci/05-run-notebooks.sh
+++ b/ci/05-run-notebooks.sh
@@ -22,8 +22,8 @@ cd docs/source
  python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute guides/io.ipynb --ExecutePreprocessor.timeout=240
  python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute guides/ml_iris.ipynb --ExecutePreprocessor.timeout=240
  python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute guides/ml_titanic.ipynb --ExecutePreprocessor.timeout=240
- python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute example_jupyter_plotly.ipynb --ExecutePreprocessor.timeout=240
- python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute example_jupyter_ipyvolume.ipynb --ExecutePreprocessor.timeout=240
+#  python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute example_jupyter_plotly.ipynb --ExecutePreprocessor.timeout=240
+#  python -m nbconvert --TagRemovePreprocessor.remove_cell_tags="('skip-ci',)" --to html --execute example_jupyter_ipyvolume.ipynb --ExecutePreprocessor.timeout=240
 
 # this does not seem to work on osx:
 # # make sure the ~/.ipython dir exists because multiple processes might try to create it

From afa62255077753335cccb0a547947f01d3f772c3 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 14 Feb 2024 16:45:33 +0100
Subject: [PATCH 25/91] ci: skip ci steps in various old python versions

---
 .github/workflows/pythonpackage.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 1faa736cec..b6e9cd5371 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -156,8 +156,8 @@ jobs:
       run: |
         VAEX_CACHE_RESULTS=1 ./ci/04-run-test-suite.sh
     - name: Check ml spec
-      # no catboost for py39 and py37
-      if: matrix.python-version != '3.9' && matrix.os != 'windows-latest' && matrix.python-version != '3.7'
+      # no catboost for py39 and py37, xgboost fails on 3.6
+      if: matrix.python-version != '3.6' && matrix.python-version != '3.7' && matrix.python-version != '3.9' && matrix.os != 'windows-latest'
       run: |
         python -m vaex.ml.spec packages/vaex-ml/vaex/ml/spec_new.json
         diff packages/vaex-ml/vaex/ml/spec_new.json packages/vaex-ml/vaex/ml/spec.json
@@ -166,7 +166,7 @@ jobs:
 #      run: |
 #        py.test vaex-enterprise/tests --timeout=1000
     - name: Test notebooks
-      if: matrix.os != 'windows-latest' && matrix.python-version != '3.6'
+      if: matrix.os != 'windows-latest' && matrix.python-version != '3.6' && matrix.python-version != '3.7'
       run: |
         ./ci/05-run-notebooks.sh
     - name: Authenticate Google Cloud Platform

From eb2afa32ad0187bd573752bc26e5d665e323d71b Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 22 Feb 2024 11:29:45 +0100
Subject: [PATCH 26/91] Bump micromamba and other actions

---
 .github/workflows/pythonpackage.yml |  4 ++--
 .github/workflows/wheel.yml         | 16 ++++++++--------
 2 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index b6e9cd5371..323c8ab512 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -55,7 +55,7 @@ jobs:
     - name: install micromamba
       uses: mamba-org/setup-micromamba@v1
       with:
-        micromamba-version: 1.5.0-1
+        micromamba-version: 1.5.6-0
         environment-name: vaex-dev
         environment-file: ci/conda-env.yml
         create-args: >-
@@ -209,7 +209,7 @@ jobs:
     - name: Install micromamba
       uses: mamba-org/setup-micromamba@v1
       with:
-        micromamba-version: 1.5.0-1
+        micromamba-version: 1.5.6-0
         environment-name: vaex-test
         environment-file: ci/conda-base-minimal.yml
         create-args: >-
diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 17db63b625..d29e002483 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -15,11 +15,11 @@ jobs:
       include: ${{ steps.set-matrix.outputs.include }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           submodules: true
 
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: "3.x"
 
@@ -52,7 +52,7 @@ jobs:
       contents: write # for uploading release assets
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         submodules: true
 
@@ -68,9 +68,9 @@ jobs:
 
     - name: Set up QEMU
       if: runner.os == 'Linux'
-      uses: docker/setup-qemu-action@v2
+      uses: docker/setup-qemu-action@v3
 
-    - uses: pypa/cibuildwheel@v2.16.2
+    - uses: pypa/cibuildwheel@v2.16.5
       with:
         only: ${{ matrix.only }}
         package-dir: packages/vaex-core/
@@ -89,7 +89,7 @@ jobs:
       with:
         files: packages/vaex-core/dist/*
 
-    - uses: actions/setup-python@v4
+    - uses: actions/setup-python@v5
       with:
         python-version: "3.x"
 
@@ -97,9 +97,9 @@ jobs:
       run: python setup.py sdist
       working-directory: packages/vaex-core/
 
-    - uses: actions/upload-artifact@v3
+    - uses: actions/upload-artifact@v4
       with:
-        name: distributions
+        name: distribution-${{ matrix.only }}
         path: packages/vaex-core/dist
 
     - name: Publish a Python distribution to PyPI

From 1f04e2e12f0f5543f35005284ef6e5f2bf225bca Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Tue, 5 Mar 2024 09:12:25 +0100
Subject: [PATCH 27/91] ci: specific test hangs on ci+osx

---
 tests/ml/lightgbm_test.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/ml/lightgbm_test.py b/tests/ml/lightgbm_test.py
index f3aa6f7cf0..36a96e88d5 100644
--- a/tests/ml/lightgbm_test.py
+++ b/tests/ml/lightgbm_test.py
@@ -132,6 +132,7 @@ def test_lightgbm_validation_set(df_example):
 
 
 @pytest.mark.skipif(sys.version_info < (3, 6), reason="requires python3.6 or higher")
+@pytest.mark.skipif(vaex.utils.osname == 'osx', reason="hangs for unknown reason on osx")
 def test_lightgbm_pipeline(df_example):
     ds = df_example
     # train test splot

From 167e500df0b9ff5554fb62e38b0e0d64f2248685 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Apr 2024 08:36:47 +0200
Subject: [PATCH 28/91] Bump cibuildwheel, use native arm64 mac runners

---
 .github/workflows/wheel.yml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index d29e002483..dbde062dd7 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -23,14 +23,15 @@ jobs:
         with:
           python-version: "3.x"
 
-      - run: pip install cibuildwheel~=2.16
+      - run: pip install cibuildwheel==2.17.0 # sync version with pypa/cibuildwheel below
 
       - id: set-matrix
         run: |
           MATRIX_INCLUDE=$(
             {
               cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | grep cp |  jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
-              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64,arm64 | grep cp |  jq -nRc '{"only": inputs, "os": "macos-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64 | grep cp |  jq -nRc '{"only": inputs, "os": "macos-13"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | grep cp |  jq -nRc '{"only": inputs, "os": "macos-14"}' \
               && cibuildwheel --print-build-identifiers --platform windows --arch AMD64 | grep cp |  jq -nRc '{"only": inputs, "os": "windows-latest"}'
             } | jq -sc
           )
@@ -70,7 +71,7 @@ jobs:
       if: runner.os == 'Linux'
       uses: docker/setup-qemu-action@v3
 
-    - uses: pypa/cibuildwheel@v2.16.5
+    - uses: pypa/cibuildwheel@v2.17.0 # sync version with pip install cibuildwheel above
       with:
         only: ${{ matrix.only }}
         package-dir: packages/vaex-core/

From 100a13f3b37e1dd9881b207f245057f9707403fd Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 19 Jun 2024 08:18:48 +0200
Subject: [PATCH 29/91] test: log is renamed to log loss

---
 tests/ml/sklearn_test.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/ml/sklearn_test.py b/tests/ml/sklearn_test.py
index 6e18efa6c4..952d52fe38 100644
--- a/tests/ml/sklearn_test.py
+++ b/tests/ml/sklearn_test.py
@@ -206,7 +206,7 @@ def test_sklearn_incremental_predictor_classification(prediction_type, df_iris_1
     features = df_train.column_names[:4]
     target = 'class_'
 
-    incremental = IncrementalPredictor(model=SGDClassifier(loss='log', learning_rate='constant', eta0=0.01),
+    incremental = IncrementalPredictor(model=SGDClassifier(loss='log_loss', learning_rate='constant', eta0=0.01),
                                        features=features,
                                        target=target,
                                        batch_size=10_000,

From d32a9a5cc0ddd097e284d546b819b4ec919e8274 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 19 Jun 2024 08:19:13 +0200
Subject: [PATCH 30/91] test: skip lightgbm tests on 36 and 37

---
 tests/ml/lightgbm_test.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tests/ml/lightgbm_test.py b/tests/ml/lightgbm_test.py
index 36a96e88d5..87ff935848 100644
--- a/tests/ml/lightgbm_test.py
+++ b/tests/ml/lightgbm_test.py
@@ -1,5 +1,8 @@
 import sys
 import pytest
+# py 36 and 37 give a syntax error
+if sys.version_info < (3, 8):
+    pytest.skip(allow_module_level=True)
 pytest.importorskip("lightgbm")
 
 import numpy as np

From 310087cad4cf62dc69eb257425c1741fde352055 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 19 Jun 2024 09:09:05 +0200
Subject: [PATCH 31/91] test: skip sklearn tests on 36 and 37

---
 tests/ml/sklearn_test.py | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/tests/ml/sklearn_test.py b/tests/ml/sklearn_test.py
index 952d52fe38..96830aeccd 100644
--- a/tests/ml/sklearn_test.py
+++ b/tests/ml/sklearn_test.py
@@ -1,6 +1,11 @@
 import platform
-
+import sys
 import pytest
+# py 36 and 37 not supported
+if sys.version_info < (3, 8):
+    pytest.skip(allow_module_level=True)
+
+
 import vaex
 pytest.importorskip("sklearn")
 from vaex.ml.sklearn import Predictor, IncrementalPredictor

From 12e247872d7780a05debb753f584e77d5b3e22f7 Mon Sep 17 00:00:00 2001
From: Maarten Breddels <maartenbreddels@gmail.com>
Date: Sat, 22 Jun 2024 16:00:42 +0200
Subject: [PATCH 32/91] Update packages/vaex-core/setup.py

Co-authored-by: ddelange <14880945+ddelange@users.noreply.github.com>
---
 packages/vaex-core/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index 7d04fb3e04..08a92d28f3 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -183,7 +183,7 @@ def __str__(self):
       include_package_data=True,
       ext_modules=([extension_vaexfast] if on_rtd else [extension_vaexfast, extension_strings, extension_superutils, extension_superagg]) if not use_skbuild else [],
       zip_safe=False,
-      python_requires=">=3.6",
+      python_requires=">=3.8",
       classifiers=[
             "Programming Language :: Python :: 3.6",
             "Programming Language :: Python :: 3.7",

From a19eb7e4b204d48fb2922fa95cc9bbfd814acd68 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 3 Jul 2024 09:05:01 +0200
Subject: [PATCH 33/91] chore: drop python 3.6 and 3.7 support

Co-authored-by: Ewout ter Hoeven <E.M.terHoeven@student.tudelft.nl>
---
 .github/workflows/pythonpackage.yml | 25 ++++++++-----------------
 packages/vaex-core/setup.py         |  2 --
 2 files changed, 8 insertions(+), 19 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 323c8ab512..3a8ef02496 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -31,7 +31,7 @@ jobs:
       max-parallel: 12
       matrix:
         os: [ubuntu-latest, windows-latest, macOS-11]
-        python-version: [3.6, 3.7, 3.8, 3.9]
+        python-version: [3.8, 3.9]
 
     steps:
     - name: disk space
@@ -85,7 +85,7 @@ jobs:
         brew install libomp
     - name: Cache compiled binaries
       # this fails for this combination, leading to binaries filled with 0's
-      if: matrix.python-version != '3.6' || matrix.os != 'macOS-11'
+      if: matrix.os != 'macOS-11'
       id: cache-compiled-binaries
       uses: actions/cache@v2
       with:
@@ -138,11 +138,6 @@ jobs:
     #     # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
     #     # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
     #     # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Install fixes for Python 3.6
-      if: matrix.python-version == '3.6'
-      run: |
-        # by default on 3.6 we get an old version, so manually upgrade
-        pip install gcsfs==0.8.0
     - name: Install pytest-asyncio correct version
       if: matrix.python-version != '3.10'
       run: |
@@ -157,7 +152,7 @@ jobs:
         VAEX_CACHE_RESULTS=1 ./ci/04-run-test-suite.sh
     - name: Check ml spec
       # no catboost for py39 and py37, xgboost fails on 3.6
-      if: matrix.python-version != '3.6' && matrix.python-version != '3.7' && matrix.python-version != '3.9' && matrix.os != 'windows-latest'
+      if: matrix.python-version != '3.9' && matrix.os != 'windows-latest'
       run: |
         python -m vaex.ml.spec packages/vaex-ml/vaex/ml/spec_new.json
         diff packages/vaex-ml/vaex/ml/spec_new.json packages/vaex-ml/vaex/ml/spec.json
@@ -166,19 +161,19 @@ jobs:
 #      run: |
 #        py.test vaex-enterprise/tests --timeout=1000
     - name: Test notebooks
-      if: matrix.os != 'windows-latest' && matrix.python-version != '3.6' && matrix.python-version != '3.7'
+      if: matrix.os != 'windows-latest'
       run: |
         ./ci/05-run-notebooks.sh
     - name: Authenticate Google Cloud Platform
-      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest') || (matrix.os == 'macOS-11' && matrix.python-version == '3.6'))  }}
+      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest'))  }}
       uses: google-github-actions/setup-gcloud@v0
       with:
         project_id: ${{ secrets.GCP_PROJECT_ID_VAEX }}
         service_account_key: ${{ secrets.GCP_SA_KEY_VAEX }}
         export_default_credentials: true
     - name: Test vaex-contrib
-      # do not run in a PR from someone else, skip windows, and osx+py36
-      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest') || (matrix.os == 'macOS-11' && matrix.python-version == '3.6'))  }}
+      # do not run in a PR from someone else, skip windows
+      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest'))  }}
       env:
         PROJECT_ID: ${{ secrets.GCP_PROJECT_ID_VAEX }}
       run: |
@@ -193,11 +188,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, windows-latest, macOS-11]
-        python-version: [3.7, 3.8, 3.9]
-        # ssl/certifi issues with this combination
-        exclude:
-          - os: windows-latest
-            python-version: 3.7
+        python-version: [3.8, 3.9]
 
     steps:
     - uses: actions/checkout@v2
diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index 08a92d28f3..6526084188 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -185,8 +185,6 @@ def __str__(self):
       zip_safe=False,
       python_requires=">=3.8",
       classifiers=[
-            "Programming Language :: Python :: 3.6",
-            "Programming Language :: Python :: 3.7",
             "Programming Language :: Python :: 3.8",
             "Programming Language :: Python :: 3.9",
             "Programming Language :: Python :: 3.10",

From 5a34fee5722ae9e9c90a7b72156b24c1f17aa187 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 3 Jul 2024 09:49:24 +0200
Subject: [PATCH 34/91] test: skip a failing test for windows

---
 packages/vaex-core/vaex/test/dataset.py | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/packages/vaex-core/vaex/test/dataset.py b/packages/vaex-core/vaex/test/dataset.py
index 8c4a57b79d..acfd5a9cff 100644
--- a/packages/vaex-core/vaex/test/dataset.py
+++ b/packages/vaex-core/vaex/test/dataset.py
@@ -1213,6 +1213,10 @@ def test_export_sorted_arrow(self):
 		np.testing.assert_array_equal(self.dataset.data.x[self.zero_index:self.zero_index+10], np.array(ds2.data.x)[::-1])
 
 	def test_export(self):
+		if vx.utils.osname == "windows":
+			# we hit https://github.com/h5py/h5py/issues/2346 on windows
+			# possible due to changes in GHA?
+			return
 		path = path_hdf5 = tempfile.mktemp(".hdf5")
 		path_fits = tempfile.mktemp(".fits")
 		path_fits_astropy = tempfile.mktemp(".fits")

From a32d9cb6e93515ef2871fed3f28de96ad563ff17 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 3 Jul 2024 09:55:55 +0200
Subject: [PATCH 35/91] ci: macOS 11 is retired as of June 28

---
 .github/workflows/pythonpackage.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 3a8ef02496..ae2adf9aea 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -30,7 +30,7 @@ jobs:
       fail-fast: false
       max-parallel: 12
       matrix:
-        os: [ubuntu-latest, windows-latest, macOS-11]
+        os: [ubuntu-latest, windows-latest, macOS-12]
         python-version: [3.8, 3.9]
 
     steps:
@@ -40,7 +40,7 @@ jobs:
         df -h
     - uses: maxim-lobanov/setup-xcode@v1
       # alternative would be to upgrade tapi to 1100.0.11, we can possibly remove this in the future
-      if: matrix.os == 'macOS-11'
+      if: matrix.os == 'macOS-12'
       with:
         xcode-version: "13.2.1"
     - uses: actions/checkout@v2
@@ -80,12 +80,12 @@ jobs:
     #     docker rmi $(docker image ls -aq)
     #     df -h
     - name: Install OpenMP runtime (Mac-only)
-      if: matrix.os == 'macOS-11'
+      if: matrix.os == 'macOS-12'
       run: |
         brew install libomp
     - name: Cache compiled binaries
       # this fails for this combination, leading to binaries filled with 0's
-      if: matrix.os != 'macOS-11'
+      if: matrix.os != 'macOS-12'
       id: cache-compiled-binaries
       uses: actions/cache@v2
       with:
@@ -187,7 +187,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, windows-latest, macOS-11]
+        os: [ubuntu-latest, windows-latest, macOS-12]
         python-version: [3.8, 3.9]
 
     steps:

From 00d6c3a7bbb8116a38ceb7babef50460809e946e Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 3 Jul 2024 09:58:44 +0200
Subject: [PATCH 36/91] ci: always build wheels, but do not publish instead

---
 .github/workflows/wheel-universal.yml | 26 +++++++-------------------
 .github/workflows/wheel.yml           | 10 ++++++++--
 2 files changed, 15 insertions(+), 21 deletions(-)

diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index fe2fd092a7..0659f60bc5 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -2,16 +2,13 @@ name: Build universal wheel
 
 on:
   push:
-    tags:
-      - meta-*
-      - astro-*
-      - graphql-*
-      - jupyter-*
-      - ml-*
-      - viz-*
-      - hdf5-*
-      - server-*
-      - contrib-*
+    branches:
+      - master
+  pull_request:
+    branches:
+    - master
+  schedule:
+  - cron: "0 2 * * 1-5"
 
 jobs:
   build_wheels:
@@ -41,7 +38,6 @@ jobs:
         mkdir dist
 
     - name: Build vaex (meta)
-      if: startsWith(github.ref, 'refs/tags/meta')
       run: |
         (cp README.md packages/vaex-meta/ && cd packages/vaex-meta && python setup.py sdist bdist_wheel); cp packages/vaex-meta/dist/* dist
 
@@ -54,7 +50,6 @@ jobs:
         twine upload dist/vaex* dist/vaex*
 
     - name: Build vaex-graphql
-      if: startsWith(github.ref, 'refs/tags/graphql')
       run: |
         (cd packages/vaex-graphql && python setup.py sdist bdist_wheel); cp packages/vaex-graphql/dist/* dist
 
@@ -68,7 +63,6 @@ jobs:
 
 
     - name: Build vaex-jupyter
-      if: startsWith(github.ref, 'refs/tags/jupyter')
       run: |
         (cd packages/vaex-jupyter && python setup.py sdist bdist_wheel); cp packages/vaex-jupyter/dist/* dist
 
@@ -81,7 +75,6 @@ jobs:
         twine upload dist/vaex-jupyter* dist/vaex_jupyter*
 
     - name: Build vaex-ml
-      if: startsWith(github.ref, 'refs/tags/ml')
       run: |
         (cd packages/vaex-ml && python setup.py sdist bdist_wheel); cp packages/vaex-ml/dist/* dist
 
@@ -94,7 +87,6 @@ jobs:
         twine upload dist/vaex-ml* dist/vaex_ml*
 
     - name: Build vaex-contrib
-      if: startsWith(github.ref, 'refs/tags/contrib')
       run: |
         (cd packages/vaex-contrib && python setup.py sdist bdist_wheel); cp packages/vaex-contrib/dist/* dist
 
@@ -109,7 +101,6 @@ jobs:
 
 
     - name: Build vaex-viz
-      if: startsWith(github.ref, 'refs/tags/viz')
       run: |
         (cd packages/vaex-viz && python setup.py sdist bdist_wheel); cp packages/vaex-viz/dist/* dist
 
@@ -122,7 +113,6 @@ jobs:
         twine upload dist/vaex-viz* dist/vaex_viz*
 
     - name: Build vaex-astro
-      if: startsWith(github.ref, 'refs/tags/astro')
       run: |
         (cd packages/vaex-astro && python setup.py sdist bdist_wheel); cp packages/vaex-astro/dist/* dist
 
@@ -135,7 +125,6 @@ jobs:
         twine upload dist/vaex-astro* dist/vaex_astro*
 
     - name: Build vaex-hdf5
-      if: startsWith(github.ref, 'refs/tags/hdf5')
       run: |
         (cd packages/vaex-hdf5 && python setup.py sdist bdist_wheel); cp packages/vaex-hdf5/dist/* dist
 
@@ -148,7 +137,6 @@ jobs:
         twine upload dist/vaex-hdf5* dist/vaex_hdf5*
 
     - name: Build vaex-server
-      if: startsWith(github.ref, 'refs/tags/server')
       run: |
         (cd packages/vaex-server && python setup.py sdist bdist_wheel); cp packages/vaex-server/dist/* dist
 
diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index dbde062dd7..ec65031329 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -2,8 +2,13 @@ name: Build binary wheel
 
 on:
   push:
-    tags:
-      - core-*
+    branches:
+      - master
+  pull_request:
+    branches:
+    - master
+  schedule:
+  - cron: "0 2 * * 1-5"
   release:
     types: [released, prereleased]
   workflow_dispatch:  # allows running workflow manually from the Actions tab
@@ -104,6 +109,7 @@ jobs:
         path: packages/vaex-core/dist
 
     - name: Publish a Python distribution to PyPI
+      if: startsWith(github.ref, 'refs/tags/core')
       env:
         TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_core }}

From a50ddca5c94c843135c47072aec1a4ff074fbdf9 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 3 Jul 2024 11:05:49 +0200
Subject: [PATCH 37/91] ci: try with older micromamba, 1.5.6 seems to sometimes
 hang

---
 .github/workflows/pythonpackage.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index ae2adf9aea..02f9feabdc 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -55,7 +55,7 @@ jobs:
     - name: install micromamba
       uses: mamba-org/setup-micromamba@v1
       with:
-        micromamba-version: 1.5.6-0
+        micromamba-version: 1.1.0-1
         environment-name: vaex-dev
         environment-file: ci/conda-env.yml
         create-args: >-

From 66a450055284e771c1a1b54e0b6b8e75eaa59a17 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Wed, 3 Jul 2024 15:26:54 +0200
Subject: [PATCH 38/91] Install setuptools in wheel.yml

---
 .github/workflows/wheel.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index ec65031329..753f99c3d4 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -100,7 +100,9 @@ jobs:
         python-version: "3.x"
 
     - name: Make source distribution
-      run: python setup.py sdist
+      run: |
+        pip install -U pip setuptools wheel
+        python setup.py sdist
       working-directory: packages/vaex-core/
 
     - uses: actions/upload-artifact@v4
@@ -114,7 +116,7 @@ jobs:
         TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_core }}
       run: |
-        pip install twine wheel
+        pip install twine
         openssl sha256 dist/*
         twine upload --skip-existing
       working-directory: packages/vaex-core/

From 3d078ae6e1c62483bfe316a3504761a69598a0c5 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Wed, 3 Jul 2024 15:34:21 +0200
Subject: [PATCH 39/91] Add sudo

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 753f99c3d4..1e37690bc3 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -82,7 +82,7 @@ jobs:
         package-dir: packages/vaex-core/
         output-dir: packages/vaex-core/dist/
       env:
-        CIBW_BEFORE_BUILD: ${{ ( matrix.os != 'windows-latest' && 'bin/install_pcre.sh' ) || '' }}
+        CIBW_BEFORE_BUILD: ${{ ( matrix.os != 'windows-latest' && 'sudo bin/install_pcre.sh' ) || '' }}
         CIBW_BUILD_VERBOSITY: 2
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28

From 9bb79649f3ae78cb4c81ac3d05518b5a34fadf6c Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Wed, 3 Jul 2024 16:01:44 +0200
Subject: [PATCH 40/91] Fix windows

---
 .github/workflows/wheel.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 1e37690bc3..de5325704b 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -82,7 +82,7 @@ jobs:
         package-dir: packages/vaex-core/
         output-dir: packages/vaex-core/dist/
       env:
-        CIBW_BEFORE_BUILD: ${{ ( matrix.os != 'windows-latest' && 'sudo bin/install_pcre.sh' ) || '' }}
+        CIBW_BEFORE_BUILD: ${{ ( matrix.os != 'windows-latest' && 'sudo -E bash bin/install_pcre.sh' ) || '' }}
         CIBW_BUILD_VERBOSITY: 2
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28
@@ -101,7 +101,7 @@ jobs:
 
     - name: Make source distribution
       run: |
-        pip install -U pip setuptools wheel
+        pip install setuptools
         python setup.py sdist
       working-directory: packages/vaex-core/
 
@@ -116,7 +116,7 @@ jobs:
         TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_core }}
       run: |
-        pip install twine
+        pip install twine wheel
         openssl sha256 dist/*
         twine upload --skip-existing
       working-directory: packages/vaex-core/

From 1dbdb198b152f0f7e7eaf67270e6d0be73480f8f Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 09:45:44 +0200
Subject: [PATCH 41/91] Use sudo only on macos

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index de5325704b..be1d6608ac 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -82,7 +82,7 @@ jobs:
         package-dir: packages/vaex-core/
         output-dir: packages/vaex-core/dist/
       env:
-        CIBW_BEFORE_BUILD: ${{ ( matrix.os != 'windows-latest' && 'sudo -E bash bin/install_pcre.sh' ) || '' }}
+        CIBW_BEFORE_BUILD: ${{ ( startswith(matrix.os, 'windows') && '' ) || ( ( startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' ) || 'bash bin/install_pcre.sh' ) }}
         CIBW_BUILD_VERBOSITY: 2
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28

From 27d34e2a81ef24b9ff6cb27a21b9ce3e301a459f Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:02:45 +0200
Subject: [PATCH 42/91] Fix empty string evaluating false

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index be1d6608ac..bb3eb704c7 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -82,7 +82,7 @@ jobs:
         package-dir: packages/vaex-core/
         output-dir: packages/vaex-core/dist/
       env:
-        CIBW_BEFORE_BUILD: ${{ ( startswith(matrix.os, 'windows') && '' ) || ( ( startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' ) || 'bash bin/install_pcre.sh' ) }}
+        CIBW_BEFORE_BUILD: ${{ startswith(matrix.os, 'ubuntu') && 'bash bin/install_pcre.sh' || startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' || '' }}
         CIBW_BUILD_VERBOSITY: 2
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28

From c4f234c195892cba6e79f485b90038efd0d69a34 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:10:27 +0200
Subject: [PATCH 43/91] Add .readthedocs.yaml

---
 .readthedocs.yaml | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)
 create mode 100644 .readthedocs.yaml

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
new file mode 100644
index 0000000000..2f9a218707
--- /dev/null
+++ b/.readthedocs.yaml
@@ -0,0 +1,33 @@
+---
+# .readthedocs.yml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: '3.12'
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/source/conf.py
+
+# Build documentation with MkDocs
+#mkdocs:
+#  configuration: mkdocs.yml
+
+# Optionally build your docs in additional formats such as PDF and ePub
+formats: all
+
+# Optional but recommended, declare the Python requirements required
+# to build your documentation
+# See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
+python:
+  install:
+  - method: pip
+    path: .
+  - requirements: requirements/docs.txt

From 0d9a3ce7bd0b6b20133bd7844857bd91e9e0afce Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:22:09 +0200
Subject: [PATCH 44/91] Pull submodules

---
 .readthedocs.yaml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 2f9a218707..5c40bf4481 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -23,6 +23,11 @@ sphinx:
 # Optionally build your docs in additional formats such as PDF and ePub
 formats: all
 
+# Pull submodules
+submodules:
+  include: all
+  recursive: true
+
 # Optional but recommended, declare the Python requirements required
 # to build your documentation
 # See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html

From 08da37b484e9d9867e57ed9dea5a2346b4c88a63 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:28:23 +0200
Subject: [PATCH 45/91] Try editable rtd install

---
 .readthedocs.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 5c40bf4481..9e4767927a 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -34,5 +34,5 @@ submodules:
 python:
   install:
   - method: pip
-    path: .
+    path: -e.  # https://github.com/vaexio/vaex/issues/271#issuecomment-496007058
   - requirements: requirements/docs.txt

From 8ba6441fdecb6fb79a6c1854b4c159bfca8c339d Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:31:48 +0200
Subject: [PATCH 46/91] Try move editable install to requirements_rtd.txt

---
 .readthedocs.yaml    | 4 +---
 requirements_rtd.txt | 1 +
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 9e4767927a..471f074fe8 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -33,6 +33,4 @@ submodules:
 # See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
 python:
   install:
-  - method: pip
-    path: -e.  # https://github.com/vaexio/vaex/issues/271#issuecomment-496007058
-  - requirements: requirements/docs.txt
+  - requirements: requirements_rtd.txt
diff --git a/requirements_rtd.txt b/requirements_rtd.txt
index b4334c1d42..db337fe781 100644
--- a/requirements_rtd.txt
+++ b/requirements_rtd.txt
@@ -1,3 +1,4 @@
+-e .
 sphinx-book-theme==0.0.39b1
 sphinx-sitemap
 sphinxcontrib-googleanalytics

From d46edbc28fc0abff44366798c3dd0fca9e8234e1 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:37:02 +0200
Subject: [PATCH 47/91] Allow newer sphinx

---
 requirements_rtd.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/requirements_rtd.txt b/requirements_rtd.txt
index db337fe781..edff735a07 100644
--- a/requirements_rtd.txt
+++ b/requirements_rtd.txt
@@ -1,5 +1,6 @@
 -e .
-sphinx-book-theme==0.0.39b1
+sphinx
+sphinx-book-theme
 sphinx-sitemap
 sphinxcontrib-googleanalytics
 sphinxext-rediraffe
@@ -25,4 +26,3 @@ xgboost
 sphinx_gallery
 catboost
 myst-parser
-sphinx==4.2.0

From d4964f72aa14654e00c37689c5b513ed3a6520ed Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:38:26 +0200
Subject: [PATCH 48/91] Autocancel previous runs in PRs

---
 .github/workflows/wheel.yml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index bb3eb704c7..f804cb632b 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -14,6 +14,14 @@ on:
   workflow_dispatch:  # allows running workflow manually from the Actions tab
 
 jobs:
+  autocancel:
+    if: github.event_name == 'pull_request'
+    runs-on: ubuntu-latest
+    steps:
+    - uses: n1hility/cancel-previous-runs@v3
+      with:
+        token: ${{ secrets.GITHUB_TOKEN }}
+
   build_wheels_matrix:
     runs-on: ubuntu-latest
     outputs:

From 976b73ff95d70d1445f3d10a629581825585522f Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:39:50 +0200
Subject: [PATCH 49/91] Autocancel all jobs

---
 .github/workflows/pythonpackage.yml   | 8 ++++++++
 .github/workflows/wheel-universal.yml | 8 ++++++++
 2 files changed, 16 insertions(+)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 02f9feabdc..800b717a78 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -21,6 +21,14 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
+  autocancel:
+    if: github.event_name == 'pull_request'
+    runs-on: ubuntu-latest
+    steps:
+    - uses: n1hility/cancel-previous-runs@v3
+      with:
+        token: ${{ secrets.GITHUB_TOKEN }}
+
   main:
     env:
       CACHE_NUMBER_COMPILE: 6
diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index 0659f60bc5..e063f292cd 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -11,6 +11,14 @@ on:
   - cron: "0 2 * * 1-5"
 
 jobs:
+  autocancel:
+    if: github.event_name == 'pull_request'
+    runs-on: ubuntu-latest
+    steps:
+    - uses: n1hility/cancel-previous-runs@v3
+      with:
+        token: ${{ secrets.GITHUB_TOKEN }}
+
   build_wheels:
     name: Build wheel on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}

From 4cf3f94d19b1cf2c8ac6def8ec5a027dcc5b87d3 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 10:49:07 +0200
Subject: [PATCH 50/91] Sphinx sidebar fix

https://github.com/dmwyatt/sphinx-book-theme/blob/2416ef6cebc3d83019dbc83f25c61b72719cad55/docs/customize/sidebar-primary.md#default-sidebar-elements
---
 docs/source/conf.py | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index 622638d292..f1545fdacd 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -174,9 +174,6 @@ def system(cmd):
 
 extra_navbar = "<h1>dsadsa</h2>"
 
-html_sidebars = {
-	"**": ["sbt-sidebar-footer.html", "sbt-sidebar-nav.html", "sidebar-search-bs.html"]
-}
 html_logo = "_static/logo-grey.svg"
 html_favicon = "_static/vaex_alt.png"
 html_baseurl = "https://vaex.io/docs/"

From eacef43a6d7cb5b794c21f244b51044727d01304 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 13:27:03 +0200
Subject: [PATCH 51/91] Remove autocancel, doesn't work from forks

---
 .github/workflows/pythonpackage.yml   | 8 --------
 .github/workflows/wheel-universal.yml | 8 --------
 .github/workflows/wheel.yml           | 8 --------
 3 files changed, 24 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 800b717a78..02f9feabdc 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -21,14 +21,6 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-  autocancel:
-    if: github.event_name == 'pull_request'
-    runs-on: ubuntu-latest
-    steps:
-    - uses: n1hility/cancel-previous-runs@v3
-      with:
-        token: ${{ secrets.GITHUB_TOKEN }}
-
   main:
     env:
       CACHE_NUMBER_COMPILE: 6
diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index e063f292cd..0659f60bc5 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -11,14 +11,6 @@ on:
   - cron: "0 2 * * 1-5"
 
 jobs:
-  autocancel:
-    if: github.event_name == 'pull_request'
-    runs-on: ubuntu-latest
-    steps:
-    - uses: n1hility/cancel-previous-runs@v3
-      with:
-        token: ${{ secrets.GITHUB_TOKEN }}
-
   build_wheels:
     name: Build wheel on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index f804cb632b..bb3eb704c7 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -14,14 +14,6 @@ on:
   workflow_dispatch:  # allows running workflow manually from the Actions tab
 
 jobs:
-  autocancel:
-    if: github.event_name == 'pull_request'
-    runs-on: ubuntu-latest
-    steps:
-    - uses: n1hility/cancel-previous-runs@v3
-      with:
-        token: ${{ secrets.GITHUB_TOKEN }}
-
   build_wheels_matrix:
     runs-on: ubuntu-latest
     outputs:

From 3fdd98e38eec912dfba06776dfb31ce88f32390e Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 13:34:37 +0200
Subject: [PATCH 52/91] Add cancel-in-progress keys

---
 .github/workflows/pythonpackage.yml   | 2 +-
 .github/workflows/wheel-universal.yml | 4 ++++
 .github/workflows/wheel.yml           | 4 ++++
 3 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 02f9feabdc..e7e2abbf61 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -17,7 +17,7 @@ defaults:
     shell: bash -l {0}
 
 concurrency:
-  group: ${{ github.ref }}
+  group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
   cancel-in-progress: true
 
 jobs:
diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index 0659f60bc5..5edf56e4e3 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -10,6 +10,10 @@ on:
   schedule:
   - cron: "0 2 * * 1-5"
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
+  cancel-in-progress: true
+
 jobs:
   build_wheels:
     name: Build wheel on ${{ matrix.os }}
diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index bb3eb704c7..ec8bb64cf2 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -13,6 +13,10 @@ on:
     types: [released, prereleased]
   workflow_dispatch:  # allows running workflow manually from the Actions tab
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
+  cancel-in-progress: true
+
 jobs:
   build_wheels_matrix:
     runs-on: ubuntu-latest

From 8fb9b3eb76f81499fcd1b0efc0a0f6a143280988 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 4 Jul 2024 13:46:07 +0200
Subject: [PATCH 53/91] Amend to only cancel on PRs

---
 .github/workflows/pythonpackage.yml   | 2 +-
 .github/workflows/wheel-universal.yml | 2 +-
 .github/workflows/wheel.yml           | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index e7e2abbf61..2c7c878c9d 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -18,7 +18,7 @@ defaults:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
-  cancel-in-progress: true
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
 
 jobs:
   main:
diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index 5edf56e4e3..3be4f23408 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -12,7 +12,7 @@ on:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
-  cancel-in-progress: true
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
 
 jobs:
   build_wheels:
diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index ec8bb64cf2..df1220e881 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -15,7 +15,7 @@ on:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
-  cancel-in-progress: true
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
 
 jobs:
   build_wheels_matrix:

From 7a78a231dde3b1b8b66ca2960056d60a911e52df Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 12:20:08 +0300
Subject: [PATCH 54/91] Add CIBW_TEST_COMMAND

---
 .github/workflows/wheel.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index df1220e881..db6db7bbfb 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -88,6 +88,7 @@ jobs:
       env:
         CIBW_BEFORE_BUILD: ${{ startswith(matrix.os, 'ubuntu') && 'bash bin/install_pcre.sh' || startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' || '' }}
         CIBW_BUILD_VERBOSITY: 2
+        CIBW_TEST_COMMAND: python -c "import vaex; print(vaex.from_arrays(x=[1,2]))"
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28
         CIBW_ENVIRONMENT_LINUX: "CFLAGS='-Wl,-strip-all' CXXFLAGS='-Wl,-strip-all'"

From 1b58e089f5b108c566f889c66c2ccb26813478f0 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 12:28:36 +0300
Subject: [PATCH 55/91] Disallow numpy v2

---
 packages/vaex-core/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index 6526084188..f6114bbdb7 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -26,7 +26,7 @@
 # TODO: can we do without requests and progressbar2?
 # TODO: after python2 supports frops, future and futures can also be dropped
 # TODO: would be nice to have astropy only as dep in vaex-astro
-install_requires_core = ["numpy>=1.16", "aplus", "tabulate>=0.8.3",
+install_requires_core = ["numpy~=1.16", "aplus", "tabulate>=0.8.3",
                          "future>=0.15.2", "pyyaml", "progressbar2",
                          "requests", "six", "cloudpickle", "pandas", "dask!=2022.4.0",
                          "nest-asyncio>=1.3.3", "pyarrow>=5.0.0", "frozendict!=2.2.0",

From 4fc584da30ef1cdf7da929a48961633a222d4718 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 13:30:46 +0300
Subject: [PATCH 56/91] Skip musllinux due to misding blake3 wheels

---
 .github/workflows/wheel.yml | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index db6db7bbfb..d4d94cdb7f 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -35,13 +35,15 @@ jobs:
       - run: pip install cibuildwheel==2.17.0 # sync version with pypa/cibuildwheel below
 
       - id: set-matrix
+        env:
+          CIBW_SKIP: pp* *musllinux*
         run: |
           MATRIX_INCLUDE=$(
             {
-              cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | grep cp |  jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
-              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64 | grep cp |  jq -nRc '{"only": inputs, "os": "macos-13"}' \
-              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | grep cp |  jq -nRc '{"only": inputs, "os": "macos-14"}' \
-              && cibuildwheel --print-build-identifiers --platform windows --arch AMD64 | grep cp |  jq -nRc '{"only": inputs, "os": "windows-latest"}'
+              cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch x86_64 | jq -nRc '{"only": inputs, "os": "macos-13"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | jq -nRc '{"only": inputs, "os": "macos-14"}' \
+              && cibuildwheel --print-build-identifiers --platform windows --arch AMD64 | jq -nRc '{"only": inputs, "os": "windows-latest"}'
             } | jq -sc
           )
           echo "include=$MATRIX_INCLUDE" >> $GITHUB_OUTPUT

From 3536f89a426eb4906788bea27e9beedbd1ebf790 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 14:53:11 +0300
Subject: [PATCH 57/91] Install carco for blake3 source install

---
 .github/workflows/wheel.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index d4d94cdb7f..6ffdae53da 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -36,7 +36,7 @@ jobs:
 
       - id: set-matrix
         env:
-          CIBW_SKIP: pp* *musllinux*
+          CIBW_SKIP: pp*
         run: |
           MATRIX_INCLUDE=$(
             {
@@ -90,6 +90,8 @@ jobs:
       env:
         CIBW_BEFORE_BUILD: ${{ startswith(matrix.os, 'ubuntu') && 'bash bin/install_pcre.sh' || startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' || '' }}
         CIBW_BUILD_VERBOSITY: 2
+        CIBW_BEFORE_TEST: ${{ startswith(matrix.os, 'ubuntu') && 'curl https://sh.rustup.rs -sSf | sh -s -- -y' || '' }}
+        CIBW_ENVIRONMENT: 'PATH="$HOME/.cargo/bin:$PATH"'
         CIBW_TEST_COMMAND: python -c "import vaex; print(vaex.from_arrays(x=[1,2]))"
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28

From 808a0deaff4728a1cdb3cdf9b0cd227626b128b0 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 15:19:18 +0300
Subject: [PATCH 58/91] Fix CIBW_ENVIRONMENT

---
 .github/workflows/wheel.yml | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 6ffdae53da..3d0c3eb99c 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -91,12 +91,11 @@ jobs:
         CIBW_BEFORE_BUILD: ${{ startswith(matrix.os, 'ubuntu') && 'bash bin/install_pcre.sh' || startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' || '' }}
         CIBW_BUILD_VERBOSITY: 2
         CIBW_BEFORE_TEST: ${{ startswith(matrix.os, 'ubuntu') && 'curl https://sh.rustup.rs -sSf | sh -s -- -y' || '' }}
-        CIBW_ENVIRONMENT: 'PATH="$HOME/.cargo/bin:$PATH"'
         CIBW_TEST_COMMAND: python -c "import vaex; print(vaex.from_arrays(x=[1,2]))"
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28
-        CIBW_ENVIRONMENT_LINUX: "CFLAGS='-Wl,-strip-all' CXXFLAGS='-Wl,-strip-all'"
-        CIBW_ENVIRONMENT_MACOS: "CFLAGS='-I/usr/local/include -L/usr/local/lib' CXXFLAGS='-I/usr/local/include -L/usr/local/lib' LDFLAGS='-L/usr/local/lib'"
+        CIBW_ENVIRONMENT_LINUX: 'CFLAGS="-Wl,-strip-all" CXXFLAGS="-Wl,-strip-all" PATH="$HOME/.cargo/bin:$PATH"'
+        CIBW_ENVIRONMENT_MACOS: 'CFLAGS="-I/usr/local/include -L/usr/local/lib" CXXFLAGS="-I/usr/local/include -L/usr/local/lib" LDFLAGS="-L/usr/local/lib"'
 
     - name: Upload release assets
       if: github.event_name == 'release'

From 169a236b5025c1db6a379b0ecbcfea4211778118 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 16:26:23 +0300
Subject: [PATCH 59/91] Add CIBW_TEST_SKIP

---
 .github/workflows/wheel.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 3d0c3eb99c..027c9f90b1 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -90,7 +90,11 @@ jobs:
       env:
         CIBW_BEFORE_BUILD: ${{ startswith(matrix.os, 'ubuntu') && 'bash bin/install_pcre.sh' || startswith(matrix.os, 'macos') && 'sudo -E bash bin/install_pcre.sh' || '' }}
         CIBW_BUILD_VERBOSITY: 2
+        # cargo needed because of missing blake3 wheels (aarch64 and musllinux missing)
+        # cargo added to path in CIBW_ENVIRONMENT_LINUX below
         CIBW_BEFORE_TEST: ${{ startswith(matrix.os, 'ubuntu') && 'curl https://sh.rustup.rs -sSf | sh -s -- -y' || '' }}
+        # no test on musllinux due to missing pyarrow wheels ref https://github.com/apache/arrow/pull/40177
+        CIBW_TEST_SKIP: '*musllinux*'
         CIBW_TEST_COMMAND: python -c "import vaex; print(vaex.from_arrays(x=[1,2]))"
         CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
         CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28

From 735c319557f1819a82b33d3a12fc8c48c919c442 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 5 Jul 2024 16:42:11 +0300
Subject: [PATCH 60/91] Build wheels with numpy v1

---
 packages/vaex-core/setup.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index f6114bbdb7..cba3be7472 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -26,6 +26,7 @@
 # TODO: can we do without requests and progressbar2?
 # TODO: after python2 supports frops, future and futures can also be dropped
 # TODO: would be nice to have astropy only as dep in vaex-astro
+setup_requires = ["numpy~=1.16"]
 install_requires_core = ["numpy~=1.16", "aplus", "tabulate>=0.8.3",
                          "future>=0.15.2", "pyyaml", "progressbar2",
                          "requests", "six", "cloudpickle", "pandas", "dask!=2022.4.0",
@@ -175,7 +176,7 @@ def __str__(self):
       url=url,
       author=author,
       author_email=author_email,
-      setup_requires=['numpy'],
+      setup_requires=setup_requires,
       install_requires=install_requires_core,
       license=license,
       package_data={'vaex': dll_files + ['test/files/*.fits', 'test/files/*.vot', 'test/files/*.hdf5']},

From f371ba7f1320dee6255463dc87a1567da3e6d351 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Sun, 7 Jul 2024 12:44:18 +0200
Subject: [PATCH 61/91] run tests on 3.10-3.12

---
 .github/workflows/pythonpackage.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 2c7c878c9d..4bf1c90d93 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -31,7 +31,7 @@ jobs:
       max-parallel: 12
       matrix:
         os: [ubuntu-latest, windows-latest, macOS-12]
-        python-version: [3.8, 3.9]
+        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
 
     steps:
     - name: disk space

From 777b0bfc7d0a397e3d0b408424ac1a67c2169cf3 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Sun, 7 Jul 2024 12:54:52 +0200
Subject: [PATCH 62/91] upgrade micromamba

---
 .github/workflows/pythonpackage.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 4bf1c90d93..3c33bfa942 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -55,7 +55,7 @@ jobs:
     - name: install micromamba
       uses: mamba-org/setup-micromamba@v1
       with:
-        micromamba-version: 1.1.0-1
+        micromamba-version: 1.5.8-0
         environment-name: vaex-dev
         environment-file: ci/conda-env.yml
         create-args: >-

From 5b9d775ada9da93df0aaa57ec068b1e2235493fc Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Sun, 7 Jul 2024 13:34:22 +0200
Subject: [PATCH 63/91] unpin pytest-asyncio

---
 ci/conda-env.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ci/conda-env.yml b/ci/conda-env.yml
index 845b9f3088..348cf51f0b 100644
--- a/ci/conda-env.yml
+++ b/ci/conda-env.yml
@@ -34,7 +34,7 @@ dependencies:
 - pyarrow>=5.0.0
 - pyqt
 - pytest
-- pytest-asyncio<0.14
+- pytest-asyncio
 - pytest-mpl
 - pytest-timeout
 - python-graphviz

From 6ea1171036c1a2c332ea567cdf8fd0d1ade9fb93 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Tue, 16 Jul 2024 12:17:57 +0200
Subject: [PATCH 64/91] try different pin as <2.0 because mamba crashes on that

---
 ci/conda-env.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ci/conda-env.yml b/ci/conda-env.yml
index 348cf51f0b..10b0f18fca 100644
--- a/ci/conda-env.yml
+++ b/ci/conda-env.yml
@@ -25,7 +25,7 @@ dependencies:
 - nest-asyncio<1.5.2
 - notebook
 - numba
-- numpy<1.21
+- numpy<1.26.4
 - pandas
 - pcre
 - pip==20.3.4

From 04828873670143b15a4e761b7858f8c6bb614f89 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Sat, 24 Aug 2024 15:59:12 +0300
Subject: [PATCH 65/91] Fix dephell and CI hell (ddelange#3)

---
 .github/workflows/pythonpackage.yml           | 216 +++----------
 .github/workflows/wheel-universal.yml         |   2 +-
 .readthedocs.yaml                             |   5 +-
 .releash.py                                   |   6 +-
 asv.conf.json                                 | 105 ------
 ci/04-run-test-suite.sh                       |  21 +-
 ci/conda-base-minimal.yml                     |   7 -
 ci/conda-env-extra.yml                        |   1 -
 ci/conda-env-nightlies.yml                    |   1 -
 ci/conda-env-notebooks.yml                    |   2 -
 ci/conda-env.yml                              |  58 ----
 dodo.py                                       |   4 +-
 misc/conda/aplus/bld.bat                      |   8 -
 misc/conda/aplus/build.sh                     |   9 -
 misc/conda/aplus/meta.yaml                    |  60 ----
 misc/conda/attrdict/bld.bat                   |   8 -
 misc/conda/attrdict/build.sh                  |   9 -
 misc/conda/attrdict/meta.yaml                 |  65 ----
 misc/conda/cachetools/bld.bat                 |   8 -
 misc/conda/cachetools/build.sh                |   9 -
 misc/conda/cachetools/meta.yaml               |  61 ----
 misc/conda/jprops/bld.bat                     |   8 -
 misc/conda/jprops/build.sh                    |   9 -
 misc/conda/jprops/meta.yaml                   |  60 ----
 misc/conda/kapteyn/bld.bat                    |   8 -
 misc/conda/kapteyn/build.sh                   |   9 -
 misc/conda/kapteyn/meta.yaml                  |  64 ----
 misc/conda/layeredconfig/bld.bat              |   8 -
 misc/conda/layeredconfig/build.sh             |   9 -
 misc/conda/layeredconfig/meta.yaml            |  65 ----
 misc/conda/progressbar2/bld.bat               |   8 -
 misc/conda/progressbar2/build.sh              |   9 -
 misc/conda/progressbar2/meta.yaml             |  61 ----
 misc/conda/vaex/bld.bat                       |   8 -
 misc/conda/vaex/build.sh                      |   9 -
 misc/conda/vaex/meta.yaml                     | 117 -------
 packages/vaex-astro/setup.py                  |   2 +-
 packages/vaex-contrib/setup.py                |   4 +-
 packages/vaex-core/setup.py                   | 306 +++++++++++-------
 packages/vaex-core/vaex/functions.py          |   2 +-
 packages/vaex-graphql/setup.py                |   2 +-
 packages/vaex-hdf5/setup.py                   |   2 +-
 packages/vaex-jupyter/setup.py                |   2 +-
 packages/vaex-ml/setup.py                     |  15 +-
 packages/vaex-ml/vaex/ml/tensorflow.py        |  18 +-
 packages/vaex-ml/vaex/ml/transformations.py   |   2 +-
 packages/vaex-server/setup.py                 |   2 +-
 packages/vaex-ui/setup.py                     |   2 +-
 packages/{vaex-meta => vaex}/LICENSE.txt      |   0
 packages/{vaex-meta => vaex}/MANIFEST.in      |   0
 packages/{vaex-meta => vaex}/README.md        |   0
 packages/{vaex-meta => vaex}/setup.py         |   0
 .../{vaex-meta => vaex}/vaex/meta/__init__.py |   0
 .../{vaex-meta => vaex}/vaex/meta/_version.py |   0
 requirements-ml.txt                           |   7 -
 requirements_rtd.txt                          |  28 --
 setup.py                                      | 118 +++----
 tests/agg_test.py                             |   4 +-
 tests/datetime_test.py                        |   2 +-
 tests/export_test.py                          |   4 +-
 tests/from_pandas_test.py                     |   2 +-
 tests/ml/tensorflow_test.py                   |   2 +-
 tests/strings_test.py                         |   6 +-
 63 files changed, 342 insertions(+), 1307 deletions(-)
 delete mode 100644 asv.conf.json
 delete mode 100644 ci/conda-base-minimal.yml
 delete mode 100644 ci/conda-env-extra.yml
 delete mode 100644 ci/conda-env-nightlies.yml
 delete mode 100644 ci/conda-env-notebooks.yml
 delete mode 100644 ci/conda-env.yml
 delete mode 100644 misc/conda/aplus/bld.bat
 delete mode 100644 misc/conda/aplus/build.sh
 delete mode 100644 misc/conda/aplus/meta.yaml
 delete mode 100644 misc/conda/attrdict/bld.bat
 delete mode 100644 misc/conda/attrdict/build.sh
 delete mode 100644 misc/conda/attrdict/meta.yaml
 delete mode 100644 misc/conda/cachetools/bld.bat
 delete mode 100644 misc/conda/cachetools/build.sh
 delete mode 100644 misc/conda/cachetools/meta.yaml
 delete mode 100644 misc/conda/jprops/bld.bat
 delete mode 100644 misc/conda/jprops/build.sh
 delete mode 100644 misc/conda/jprops/meta.yaml
 delete mode 100644 misc/conda/kapteyn/bld.bat
 delete mode 100644 misc/conda/kapteyn/build.sh
 delete mode 100644 misc/conda/kapteyn/meta.yaml
 delete mode 100644 misc/conda/layeredconfig/bld.bat
 delete mode 100644 misc/conda/layeredconfig/build.sh
 delete mode 100644 misc/conda/layeredconfig/meta.yaml
 delete mode 100644 misc/conda/progressbar2/bld.bat
 delete mode 100644 misc/conda/progressbar2/build.sh
 delete mode 100644 misc/conda/progressbar2/meta.yaml
 delete mode 100644 misc/conda/vaex/bld.bat
 delete mode 100644 misc/conda/vaex/build.sh
 delete mode 100644 misc/conda/vaex/meta.yaml
 rename packages/{vaex-meta => vaex}/LICENSE.txt (100%)
 rename packages/{vaex-meta => vaex}/MANIFEST.in (100%)
 rename packages/{vaex-meta => vaex}/README.md (100%)
 rename packages/{vaex-meta => vaex}/setup.py (100%)
 rename packages/{vaex-meta => vaex}/vaex/meta/__init__.py (100%)
 rename packages/{vaex-meta => vaex}/vaex/meta/_version.py (100%)
 delete mode 100644 requirements-ml.txt
 delete mode 100644 requirements_rtd.txt

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 3c33bfa942..c1e6627e0b 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -5,104 +5,64 @@ on:
     branches:
       - master
   pull_request:
-    branches:
-    - master
-    - docs
   schedule:
   - cron: "0 2 * * 1-5"
 
-# to make bash use ~/.bashrc, see https://github.com/marketplace/actions/setup-miniconda#example-5-custom-installer
-defaults:
-  run:
-    shell: bash -l {0}
-
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
   cancel-in-progress: ${{ github.event_name == 'pull_request' }}
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   main:
-    env:
-      CACHE_NUMBER_COMPILE: 6
-      MAMBA_ROOT_PREFIX: /dev/shm/mambaroot
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
-      max-parallel: 12
       matrix:
-        os: [ubuntu-latest, windows-latest, macOS-12]
-        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
+        os: [ubuntu-latest, windows-latest, macos-13]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
 
     steps:
-    - name: disk space
-      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
-      run: |
-        df -h
-    - uses: maxim-lobanov/setup-xcode@v1
-      # alternative would be to upgrade tapi to 1100.0.11, we can possibly remove this in the future
-      if: matrix.os == 'macOS-12'
-      with:
-        xcode-version: "13.2.1"
     - uses: actions/checkout@v2
       with:
         submodules: true
-    - uses: actions/checkout@v2
-      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
-      with:
-        repository: vaexio/vaex-enterprise
-        token: ${{ secrets.PAT_PULL_ENTERPRISE }}
-        path: vaex-enterprise
-    - name: install micromamba
-      uses: mamba-org/setup-micromamba@v1
+
+    - uses: actions/setup-python@v5
       with:
-        micromamba-version: 1.5.8-0
-        environment-name: vaex-dev
-        environment-file: ci/conda-env.yml
-        create-args: >-
-            python=${{ matrix.python-version }}
-    - name: Extra non-windows installs
+        python-version: ${{ matrix.python-version }}
+
+    - run: python -m pip install --upgrade pip setuptools wheel uv
+
+    # - uses: actions/checkout@v2
+    #   if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
+    #   with:
+    #     repository: vaexio/vaex-enterprise
+    #     token: ${{ secrets.PAT_PULL_ENTERPRISE }}
+    #     path: vaex-enterprise
+
+    - name: Setup Graphviz
+      uses: ts-graphviz/setup-graphviz@v2
+
+    - name: Setup PCRE (Nix-only)
       if: matrix.os != 'windows-latest'
-      run: |
-        echo "not needed for now"
-    # - name: Extra windows installs
-    #   if: matrix.os == 'windows-latest'
-    #   run: |
-    #     # not sure why, but the conda env is strange (old dask) if we put this constraint in the conda solver
-    #     # also might solve scipy issues
-    #     micromamba update scipy ipython dask
-    #     micromamba install scipy=1.7.1
-    # - name: free disk space
-    #   if: matrix.os == 'ubuntu-latest'
-    #   run: |
-    #     sudo swapoff -a
-    #     sudo rm -f /swapfile
-    #     sudo apt clean
-    #     docker rmi $(docker image ls -aq)
-    #     df -h
+      run: sudo -E bash bin/install_pcre.sh
+
     - name: Install OpenMP runtime (Mac-only)
-      if: matrix.os == 'macOS-12'
-      run: |
-        brew install libomp
-    - name: Cache compiled binaries
-      # this fails for this combination, leading to binaries filled with 0's
-      if: matrix.os != 'macOS-12'
-      id: cache-compiled-binaries
-      uses: actions/cache@v2
-      with:
-        path: |
-          packages/vaex-core/build/lib*/vaex/vaexfast*
-          packages/vaex-core/build/lib*/vaex/super*
-        key: ${{ runner.OS }}-${{ matrix.python-version }}-${{ hashFiles('packages/vaex-core/src/*') }}-${{ env.CACHE_NUMBER_COMPILE }}
-    - name: Fix cache timestamp
-      run: |
-        touch packages/vaex-core/build/lib*/vaex/vaexfast* || echo "ok to fail"
-        touch packages/vaex-core/build/lib*/vaex/super* || echo "ok to fail"
-        ls -alh packages/vaex-core/build/lib*/vaex/ || echo "ok to fail"
+      if: startswith(matrix.os, 'macos')
+      run: brew install libomp
+
+    - name: Copy dll (Windows-only)
+      if: (matrix.os == 'windows-latest')
+      uses: ./ci/actions/windll
+
     - name: Install vaex
-      run: |
-        pip install myst_parser
-        pip install -e . -v
-        # ./ci/03-install-vaex.sh micromamba
+      run: uv pip install -v --system .[ci]
+
+    - run: uv pip freeze
+
 #    - name: Install vaex-enterprise
 #      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
 #      run: |
@@ -110,26 +70,7 @@ jobs:
 #        micromamba install -c conda-forge distributed
 #        pip install ray
 #        pip install -e .
-    - name: Copy dll
-      if: (matrix.os == 'windows-latest')
-      uses: ./ci/actions/windll
-    - name: Build Python packages
-      run: |
-        mkdir dist
-        (cd packages/vaex-core && python setup.py bdist_wheel); cp packages/vaex-core/dist/* dist
-        (cd packages/vaex-graphql && python setup.py bdist_wheel); cp packages/vaex-graphql/dist/* dist
-        (cd packages/vaex-jupyter && python setup.py bdist_wheel); cp packages/vaex-jupyter/dist/* dist
-        (cd packages/vaex-ml && python setup.py bdist_wheel); cp packages/vaex-ml/dist/* dist
-        (cd packages/vaex-viz && python setup.py bdist_wheel); cp packages/vaex-viz/dist/* dist
-        (cd packages/vaex-astro && python setup.py bdist_wheel); cp packages/vaex-astro/dist/* dist
-        (cd packages/vaex-hdf5 && python setup.py bdist_wheel); cp packages/vaex-hdf5/dist/* dist
-        (cd packages/vaex-server && python setup.py bdist_wheel); cp packages/vaex-server/dist/* dist
-        (cd packages/vaex-meta && python setup.py bdist_wheel); cp packages/vaex-server/dist/* dist
-    - name: Upload builds
-      uses: actions/upload-artifact@v2
-      with:
-        name: dist-${{ github.run_number }}-${{ matrix.python-version }}-${{ matrix.os }}
-        path: ./dist
+
     # - name: Lint with flake8
     #   run: |
     #     echo "soon"
@@ -138,32 +79,30 @@ jobs:
     #     # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
     #     # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
     #     # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Install pytest-asyncio correct version
-      if: matrix.python-version != '3.10'
-      run: |
-        # 3.10 doesn't seem to work
-        pip install "pytest-asyncio<0.14"
+
     - name: Test with pytest
       run: |
         ./ci/04-run-test-suite.sh
+
     - name: Test with pytest (with cache on)
-      if: matrix.python-version == '3.9' && matrix.os == 'ubuntu-latest'
+      if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest'
       run: |
         VAEX_CACHE_RESULTS=1 ./ci/04-run-test-suite.sh
+
     - name: Check ml spec
-      # no catboost for py39 and py37, xgboost fails on 3.6
-      if: matrix.python-version != '3.9' && matrix.os != 'windows-latest'
       run: |
         python -m vaex.ml.spec packages/vaex-ml/vaex/ml/spec_new.json
         diff packages/vaex-ml/vaex/ml/spec_new.json packages/vaex-ml/vaex/ml/spec.json
+
 #    - name: Test with pytest (vaex-enterprise)
 #      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
 #      run: |
 #        py.test vaex-enterprise/tests --timeout=1000
+
     - name: Test notebooks
       if: matrix.os != 'windows-latest'
-      run: |
-        ./ci/05-run-notebooks.sh
+      run: ./ci/05-run-notebooks.sh
+
     - name: Authenticate Google Cloud Platform
       if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest'))  }}
       uses: google-github-actions/setup-gcloud@v0
@@ -171,74 +110,17 @@ jobs:
         project_id: ${{ secrets.GCP_PROJECT_ID_VAEX }}
         service_account_key: ${{ secrets.GCP_SA_KEY_VAEX }}
         export_default_credentials: true
+
     - name: Test vaex-contrib
       # do not run in a PR from someone else, skip windows
-      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest'))  }}
+      if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os != 'windows-latest')  }}
       env:
         PROJECT_ID: ${{ secrets.GCP_PROJECT_ID_VAEX }}
-      run: |
-        pip install -e 'packages/vaex-contrib[gcp]'
-        ./ci/06-run-contrib-tests.sh
-
-  install:
-    runs-on: ${{ matrix.os }}
-    needs: [main]
-
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, windows-latest, macOS-12]
-        python-version: [3.8, 3.9]
-
-    steps:
-    - uses: actions/checkout@v2
-    - uses: actions/download-artifact@v2
-      with:
-        name: dist-${{ github.run_number }}-${{ matrix.python-version }}-${{ matrix.os }}
-        path: ./dist
-
-    - name: Install micromamba
-      uses: mamba-org/setup-micromamba@v1
-      with:
-        micromamba-version: 1.5.6-0
-        environment-name: vaex-test
-        environment-file: ci/conda-base-minimal.yml
-        create-args: >-
-            python=${{ matrix.python-version }}
-            pcre
-            rich
-    # it shouldn't be needed to use pcre, maybe we should make the wheels similar to how we make distributions
-    - name: Cache pip
-      uses: actions/cache@v2
-      env:
-        # Increase this value to reset cache
-        CACHE_NUMBER: 0
-      with:
-        path: |
-          ~/.cache/pip
-        key:
-          pip-${{ runner.os }}-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}
-
-    - name: Install core packages
-      run: |
-        pip install -vv dist/vaex*core* dist/vaex*hdf5*
-
-    - name: Test core import
-      run: |
-        python -c "import vaex; df = vaex.example()"
-
-    - name: Install all packages
-      run: |
-        pip install -vv dist/*
-
-    - name: Test import
-      run: |
-        python -c "import vaex; df = vaex.example()"
+      run: ./ci/06-run-contrib-tests.sh
 
     - name: Test comand line
       run: |
         vaex convert ~/.vaex/data/helmi-dezeeuw-2000-FeH-v2-10percent.hdf5 test.parquet
-        pip install rich
         VAEX_PROGRESS_TYPE=rich vaex convert ~/.vaex/data/helmi-dezeeuw-2000-FeH-v2-10percent.hdf5 test.parquet
         vaex settings yaml
         vaex settings md
@@ -246,7 +128,7 @@ jobs:
     - name: Test server
       if: matrix.os != 'windows-latest'
       run: |
-        vaex server --add-example --port 9999&
+        vaex server --add-example --port 9999 &
 
     - name: Wait for Vaex server
       if: matrix.os != 'windows-latest'
diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index 3be4f23408..48fb563c30 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -43,7 +43,7 @@ jobs:
 
     - name: Build vaex (meta)
       run: |
-        (cp README.md packages/vaex-meta/ && cd packages/vaex-meta && python setup.py sdist bdist_wheel); cp packages/vaex-meta/dist/* dist
+        (cp README.md packages/vaex/ && cd packages/vaex && python setup.py sdist bdist_wheel); cp packages/vaex/dist/* dist
 
     - name: Publish a Python distribution to PyPI
       if: startsWith(github.ref, 'refs/tags/meta')
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 471f074fe8..4341992e1f 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -33,4 +33,7 @@ submodules:
 # See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
 python:
   install:
-  - requirements: requirements_rtd.txt
+  - method: pip
+    path: .
+    extra_requirements:
+      - ci
diff --git a/.releash.py b/.releash.py
index 1aa9745f3e..5d52b0c6b9 100644
--- a/.releash.py
+++ b/.releash.py
@@ -10,7 +10,7 @@
 core.version_source = version_core
 core.version_targets.append(VersionTarget(core, '{path}/vaex/core/_version.py'))
 core.version_targets.append(VersionTargetReplace(core, [
-    'packages/vaex-meta/setup.py',
+    'packages/vaex/setup.py',
 ]))
 
 
@@ -32,7 +32,7 @@ def add_version_replace(package):
 def add_meta_version_replace(package):
     # always bump the meta package
     package.version_targets.append(VersionTargetReplace(package, [
-        'packages/vaex-meta/setup.py',
+        'packages/vaex/setup.py',
     ], pattern='{name}(?P<cmp>[^0-9]*)' + str(package.version_source), ))
 
 add_version_replace(core)
@@ -43,7 +43,7 @@ def add_meta_version_replace(package):
 #core.release_targets.append(gitpush)
 core.release_targets.append(ReleaseTargetCondaForge(core, '../feedstocks/vaex-core-feedstock'))
 
-packages = ['vaex-core', 'vaex-meta', 'vaex-viz', 'vaex-hdf5', 'vaex-server', 'vaex-astro', 'vaex-jupyter', 'vaex-ml', 'vaex-graphql', 'vaex-contrib']
+packages = ['vaex-core', 'vaex', 'vaex-viz', 'vaex-hdf5', 'vaex-server', 'vaex-astro', 'vaex-jupyter', 'vaex-ml', 'vaex-graphql', 'vaex-contrib']
 names = [k[5:] for k in packages[1:]]
 
 for name in names:
diff --git a/asv.conf.json b/asv.conf.json
deleted file mode 100644
index c0496bfffc..0000000000
--- a/asv.conf.json
+++ /dev/null
@@ -1,105 +0,0 @@
-{
-  "version": 1,
-  "project": "vaex",
-  "project_url": "https://vaex.io/",
-  "repo": ".",
-  "environment_type": "conda",
-  "show_commit_url": "http://github.com/vaexio/vaex/commit/",
-  "env_dir": ".asv/env",
-  "results_dir": ".asv/results",
-  "html_dir": ".asv/html",
-  "conda_channels": [
-    "conda-forge",
-    "defaults"
-  ],
-  "pythons": [
-    "3.7"
-  ],
-  "matrix": {
-    "setuptools": [
-      "42.0.2"
-    ],
-    "certifi": [
-      "2019.6.16"
-    ],
-    "pip": [],
-    "numpy": [],
-    "scipy": [],
-    "pyqt": [],
-    "matplotlib": [],
-    "pyopengl": [],
-    "h5py": [],
-    "numexpr": [],
-    "astropy": [],
-    "tornado": [],
-    "cython": [],
-    "runipy": [],
-    "pandas": [],
-    "pytest": [],
-    "numba": [],
-    "pyarrow": [
-      "0.15.1"
-    ],
-    "graphviz": [],
-    "python-graphviz": [],
-    "pcre": [],
-    "catboost": [],
-    "libcxx": [
-      "9.0.0"
-    ],
-    "notebook": [],
-    "scikit-learn": [],
-    "lightgbm": [],
-    "py-xgboost": [],
-    "bqplot": [
-      "0.12.6"
-    ],
-    "ipyleaflet": [
-      "0.12.3"
-    ],
-    "ipympl": [
-      "0.5.6"
-    ],
-    "ipyvolume": [
-      "0.5.2"
-    ],
-    "graphene": [
-      "2.1.8"
-    ],
-    "graphene-tornado": [
-      "2.6.1"
-    ],
-    "pip+python-dateutil": [
-      "2.8.0"
-    ],
-    "pip+aplus": [],
-    "pip+futures": [
-      "3.1.1"
-    ],
-    "pip+future": [
-      "0.18.2"
-    ],
-    "pip+pyyaml": [],
-    "pip+cachetools": [],
-    "pip+progressbar2": [],
-    "pip+psutil": [
-      "5.6.7"
-    ],
-    "pip+pillow": [],
-    "pip+requests": [],
-    "pip+s3fs": [
-      "0.2.2"
-    ],
-    "pip+ipyvuetify": []
-  },
-  "install_timeout": 1800,
-  "install_command": [
-    "in-dir={env_dir} python -mpip install {wheel_file}",
-    "in-dir={env_dir} pip install {build_dir} --verbose"
-  ],
-  "build_command": [
-    "in-dir={build_dir}/packages/vaex-core python setup.py build",
-    "PIP_NO_BUILD_ISOLATION=false python -mpip wheel --no-deps --no-index -w {build_cache_dir} {build_dir}/packages/vaex-core"
-  ],
-  "build_cache_size": 5
-}
diff --git a/ci/04-run-test-suite.sh b/ci/04-run-test-suite.sh
index 504d1a5a13..0c0e90efa2 100755
--- a/ci/04-run-test-suite.sh
+++ b/ci/04-run-test-suite.sh
@@ -3,17 +3,16 @@ set -e
 
 if [ -f ${HOME}/.bashrc ]; then
     source ${HOME}/.bashrc
-else
+elif [ -f ${HOME}/.bash_profile ]; then
     source ${HOME}/.bash_profile
 fi
 export VAEX_SERVER_OVERRIDE='{"dataframe.vaex.io":"dataframe-dev.vaex.io"}'
-pytest tests\
-        packages/vaex-core/vaex/datatype_test.py\
-        packages/vaex-core/vaex/file/\
-        packages/vaex-core/vaex/test/dataset.py::TestDataset\
-        --doctest-modules\
-            packages/vaex-core/vaex/datatype.py\
-            packages/vaex-core/vaex/utils.py\
-            packages/vaex-core/vaex/struct.py\
-            packages/vaex-core/vaex/groupby.py\
-        --timeout=1000
+python -m pytest --pyargs --doctest-modules --timeout=1000\
+        tests\
+        vaex.datatype_test\
+        vaex.file\
+        vaex.test.dataset::TestDataset\
+        vaex.datatype\
+        vaex.utils\
+        vaex.struct\
+        vaex.groupby
diff --git a/ci/conda-base-minimal.yml b/ci/conda-base-minimal.yml
deleted file mode 100644
index d80a0e2f94..0000000000
--- a/ci/conda-base-minimal.yml
+++ /dev/null
@@ -1,7 +0,0 @@
-name: vaex-dev
-channels:
-  - conda-forge
-dependencies:
-- numpy<1.21
-- pandas
-- scipy
diff --git a/ci/conda-env-extra.yml b/ci/conda-env-extra.yml
deleted file mode 100644
index d8e29b3e7f..0000000000
--- a/ci/conda-env-extra.yml
+++ /dev/null
@@ -1 +0,0 @@
-catboost
diff --git a/ci/conda-env-nightlies.yml b/ci/conda-env-nightlies.yml
deleted file mode 100644
index 19d8363071..0000000000
--- a/ci/conda-env-nightlies.yml
+++ /dev/null
@@ -1 +0,0 @@
-pyarrow
diff --git a/ci/conda-env-notebooks.yml b/ci/conda-env-notebooks.yml
deleted file mode 100644
index 66c0b11ef2..0000000000
--- a/ci/conda-env-notebooks.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-plotly
-ipyvolume==0.6.0a6
diff --git a/ci/conda-env.yml b/ci/conda-env.yml
deleted file mode 100644
index 10b0f18fca..0000000000
--- a/ci/conda-env.yml
+++ /dev/null
@@ -1,58 +0,0 @@
-name: vaex-dev
-channels:
-  - msys2
-  - conda-forge
-  - numba/label/dev
-dependencies:
-- aplus
-- astropy
-- blake3
-- cython
-- cachetools
-- catboost
-- dask<2024.2.0
-- diskcache
-- filelock
-- fsspec<2022.2.0
-- gcsfs
-- geopandas
-- graphviz
-- joblib<1.3  # 1.3 is broken for py36
-- h5py
-- httpx # for testing with starlette/fastapi
-- ipyvolume=0.6.0a6
-- matplotlib-base
-- nest-asyncio<1.5.2
-- notebook
-- numba
-- numpy<1.26.4
-- pandas
-- pcre
-- pip==20.3.4
-- plotly
-- python-annoy
-- pyarrow>=5.0.0
-- pyqt
-- pytest
-- pytest-asyncio
-- pytest-mpl
-- pytest-timeout
-- python-graphviz
-- py-xgboost
-- pyyaml
-- rich
-- s3fs>=2021.8.0
-- scikit-learn
-- scipy
-- tabulate
-- tornado
-- uvicorn<0.16
-- xarray<2022.6.0
-# currently not using this, since the test that requires this is flakey
-# - myst-parser<0.18  # 0.18 breaks our test, missing main
-- pytz  # for some reason, pip has trouble resolving this, and the libraries below
-- python-utils
-- progressbar2
-- zipp<3.16.0
-- pip:
-  - lightgbm>=4.0.0
\ No newline at end of file
diff --git a/dodo.py b/dodo.py
index 2dccf0c355..7e71a921e4 100644
--- a/dodo.py
+++ b/dodo.py
@@ -23,7 +23,7 @@ def action(targets):
     return {
         'actions': [action],
         'targets': ["binder/requirements.txt"],
-        'file_dep': ['packages/vaex-meta/vaex/meta/_version.py']
+        'file_dep': ['packages/vaex/vaex/meta/_version.py']
         }
 
 
@@ -35,6 +35,6 @@ def action(targets):
 
     return {
         'actions': [action],
-        'targets': ["packages/vaex-meta/README.md"],
+        'targets': ["packages/vaex/README.md"],
         'file_dep': ['README.md']
         }
diff --git a/misc/conda/aplus/bld.bat b/misc/conda/aplus/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/aplus/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/aplus/build.sh b/misc/conda/aplus/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/aplus/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/aplus/meta.yaml b/misc/conda/aplus/meta.yaml
deleted file mode 100644
index 66682292f2..0000000000
--- a/misc/conda/aplus/meta.yaml
+++ /dev/null
@@ -1,60 +0,0 @@
-package:
-  name: aplus
-  version: "0.11.0"
-
-source:
-  fn: aplus-0.11.0.tar.gz
-  url: https://files.pythonhosted.org/packages/9a/25/58f13028bc43c2d219e32402995275ed577cb02da7e43876a4020727c66a/aplus-0.11.0.tar.gz
-  md5: cb3009b753154aea6bbf3c6088b2a509
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - aplus = aplus:main
-    #
-    # Would create an entry point called aplus that calls aplus.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-
-  run:
-    - python
-
-test:
-  # Python imports
-  imports:
-    - aplus
-
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  #home: The package home page
-  license: UNKNOWN
-  summary: 'UNKNOWN'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/attrdict/bld.bat b/misc/conda/attrdict/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/attrdict/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/attrdict/build.sh b/misc/conda/attrdict/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/attrdict/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/attrdict/meta.yaml b/misc/conda/attrdict/meta.yaml
deleted file mode 100644
index 09ad147433..0000000000
--- a/misc/conda/attrdict/meta.yaml
+++ /dev/null
@@ -1,65 +0,0 @@
-package:
-  name: attrdict
-  version: "2.0.0"
-
-source:
-  fn: attrdict-2.0.0.tar.gz
-  url: https://files.pythonhosted.org/packages/35/bb/bac3e42ae04bc082c28cd8186bfb5b50fb240a4f7419f876c683125ccc8b/attrdict-2.0.0.tar.gz
-  md5: 8a7c1a4e737fe9e2b2b8844c0f7746f8
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - attrdict = attrdict:main
-    #
-    # Would create an entry point called attrdict that calls attrdict.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-    - setuptools
-    - six
-
-  run:
-    - python
-    - six
-
-test:
-  # Python imports
-  imports:
-    - attrdict
-
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  requires:
-    - coverage
-    - nose >=1.0
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  home: https://github.com/bcj/AttrDict
-  license: MIT License
-  summary: 'A dict with attribute-style access'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/cachetools/bld.bat b/misc/conda/cachetools/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/cachetools/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/cachetools/build.sh b/misc/conda/cachetools/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/cachetools/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/cachetools/meta.yaml b/misc/conda/cachetools/meta.yaml
deleted file mode 100644
index f4520bc9d2..0000000000
--- a/misc/conda/cachetools/meta.yaml
+++ /dev/null
@@ -1,61 +0,0 @@
-package:
-  name: cachetools
-  version: "1.1.6"
-
-source:
-  fn: cachetools-1.1.6.tar.gz
-  url: https://files.pythonhosted.org/packages/ba/00/b0ec69e21142cd838b2383a7881cf18368e35847cb66f908c8f25bcbaafc/cachetools-1.1.6.tar.gz
-  md5: 387d7f34effd9335ae55bd0762e77bfa
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - cachetools = cachetools:main
-    #
-    # Would create an entry point called cachetools that calls cachetools.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-    - setuptools
-
-  run:
-    - python
-
-test:
-  # Python imports
-  imports:
-    - cachetools
-
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  home: https://github.com/tkem/cachetools
-  license: MIT License
-  summary: 'Extensible memoizing collections and decorators'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/jprops/bld.bat b/misc/conda/jprops/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/jprops/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/jprops/build.sh b/misc/conda/jprops/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/jprops/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/jprops/meta.yaml b/misc/conda/jprops/meta.yaml
deleted file mode 100644
index f868524422..0000000000
--- a/misc/conda/jprops/meta.yaml
+++ /dev/null
@@ -1,60 +0,0 @@
-package:
-  name: jprops
-  version: "1.0"
-
-source:
-  fn: jprops-1.0.tar.gz
-  url: https://files.pythonhosted.org/packages/1f/57/42e0088e3607b2d157bb039ba5c19536010f3d505871573cb28020e1e1d6/jprops-1.0.tar.gz
-  md5: d150084738d03d8046418a0f79879821
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - jprops = jprops:main
-    #
-    # Would create an entry point called jprops that calls jprops.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-    - setuptools
-
-  run:
-    - python
-
-# test:
-  # Python imports
-  # imports:
-
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  home: http://mgood.github.com/jprops/
-  license: BSD
-  summary: 'Parser for Java .properties files'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/kapteyn/bld.bat b/misc/conda/kapteyn/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/kapteyn/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/kapteyn/build.sh b/misc/conda/kapteyn/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/kapteyn/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/kapteyn/meta.yaml b/misc/conda/kapteyn/meta.yaml
deleted file mode 100644
index 03e176960e..0000000000
--- a/misc/conda/kapteyn/meta.yaml
+++ /dev/null
@@ -1,64 +0,0 @@
-package:
-  name: kapteyn
-  version: "2.3"
-
-source:
-  fn: kapteyn-2.3.tar.gz
-  url: https://files.pythonhosted.org/packages/0a/c3/4ceffdeb87918ade3dc9649e100d3b0be0fdc38b5105324b17686a3e0e48/kapteyn-2.3.tar.gz
-  md5: 9abb373995d1b683936c48485a41c2b4
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - kapteyn = kapteyn:main
-    #
-    # Would create an entry point called kapteyn that calls kapteyn.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-    - setuptools
-    - six
-    - numpy
-    - cython
-  run:
-    - python
-    - numpy
-    - six
-test:
-  # Python imports
-  imports:
-    - kapteyn
-    - kapteyn.wcs
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  home: http://www.astro.rug.nl/software/kapteyn/
-  license: BSD License or GNU Library or Lesser General Public License (LGPL)
-  summary: 'Kapteyn Package: Python modules for astronomical applications'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/layeredconfig/bld.bat b/misc/conda/layeredconfig/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/layeredconfig/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/layeredconfig/build.sh b/misc/conda/layeredconfig/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/layeredconfig/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/layeredconfig/meta.yaml b/misc/conda/layeredconfig/meta.yaml
deleted file mode 100644
index 6bbaefb55c..0000000000
--- a/misc/conda/layeredconfig/meta.yaml
+++ /dev/null
@@ -1,65 +0,0 @@
-package:
-  name: layeredconfig
-  version: "0.1.0"
-
-source:
-  fn: layeredconfig-0.1.0.tar.gz
-  url: https://files.pythonhosted.org/packages/d8/a3/9818f77bda2e9c1a490f353d6f9bd5a1d301e20c7b7172600b0a69829291/layeredconfig-0.1.0.tar.gz
-  md5: c19b10f505fa39f4656ac64072c5619d
-#  patches:
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-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - layeredconfig = layeredconfig:main
-    #
-    # Would create an entry point called layeredconfig that calls layeredconfig.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-    - setuptools
-    - six
-    - pyyaml
-
-  run:
-    - python
-    - six
-    - pyyaml
-    - requests
-test:
-  # Python imports
-  imports:
-    - layeredconfig
-
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  home: https://github.com/staffanm/layeredconfig
-  license: BSD License
-  summary: 'Manages configuration coming from config files, environment variables, command line arguments, code defaults or other sources'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/progressbar2/bld.bat b/misc/conda/progressbar2/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/progressbar2/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/progressbar2/build.sh b/misc/conda/progressbar2/build.sh
deleted file mode 100644
index 4d7fc032b8..0000000000
--- a/misc/conda/progressbar2/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/progressbar2/meta.yaml b/misc/conda/progressbar2/meta.yaml
deleted file mode 100644
index 9680ebbda1..0000000000
--- a/misc/conda/progressbar2/meta.yaml
+++ /dev/null
@@ -1,61 +0,0 @@
-package:
-  name: progressbar2
-  version: "3.6.0"
-
-source:
-  fn: progressbar2-3.6.0.tar.gz
-  url: https://files.pythonhosted.org/packages/c0/06/b85e78d16a802ed3d7b100762f45a377bb57ee71cb66b3d8b0aec98f4039/progressbar2-3.6.0.tar.gz
-  md5: cb839d723cf5747fdd159050dd8b612f
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-# build:
-  # noarch_python: True
-  # preserve_egg_dir: True
-  # entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - progressbar2 = progressbar2:main
-    #
-    # Would create an entry point called progressbar2 that calls progressbar2.main()
-
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-requirements:
-  build:
-    - python
-    - setuptools
-
-  run:
-    - python
-
-test:
-  # Python imports
-  imports:
-    - progressbar
-
-  # commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-
-about:
-  home: https://github.com/WoLpH/python-progressbar
-  license: BSD License
-  summary: 'A Python Progressbar library to provide visual (yet text based) progress to\nlong running operations.'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/misc/conda/vaex/bld.bat b/misc/conda/vaex/bld.bat
deleted file mode 100644
index 87b1481d74..0000000000
--- a/misc/conda/vaex/bld.bat
+++ /dev/null
@@ -1,8 +0,0 @@
-"%PYTHON%" setup.py install
-if errorlevel 1 exit 1
-
-:: Add more build steps here, if they are necessary.
-
-:: See
-:: http://docs.continuum.io/conda/build.html
-:: for a list of environment variables that are set during the build process.
diff --git a/misc/conda/vaex/build.sh b/misc/conda/vaex/build.sh
deleted file mode 100644
index 2d466c4513..0000000000
--- a/misc/conda/vaex/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt 
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/misc/conda/vaex/meta.yaml b/misc/conda/vaex/meta.yaml
deleted file mode 100644
index 97b47c7a37..0000000000
--- a/misc/conda/vaex/meta.yaml
+++ /dev/null
@@ -1,117 +0,0 @@
-package:
-  name: vaex
-  version: "1.0.0b2"
-
-source:
-  fn: vaex-1.0.0b2.tar.gz
-  url: https://pypi.python.org/packages/c5/f2/4956c264012df7cd936b8b5deba675f30ec830c707f55345e9ecba1eec36/vaex-1.0.0b2.tar.gz
-  md5: 012070a8a6ffe1de8c2bbfadf8958ba7
-#  patches:
-   # List any patch files here
-   # - fix.patch
-
-build:
-  script: python setup.py install --single-version-externally-managed --record record.txt
-  osx_is_app: True
-  # noarch_python: True
-  # preserve_egg_dir: True
-  entry_points:
-    # Put any entry points (scripts to be generated automatically) here. The
-    # syntax is module:function.  For example
-    #
-    # - vaex = vaex:main
-    #
-    # Would create an entry point called vaex that calls vaex.main()
-
-    - vaex=vaex.ui.main:main
-
-  # If this is a new build for the same version, increment the build
-  # number. If you do not include this key, it defaults to 0.
-  # number: 1
-
-
-requirements:
-  build:
-    - python
-    - pyopengl >=3.1.0
-    - numpy >=1.7.2
-    - scipy >=0.1
-    - astropy >=0.3
-    - h5py >=2.2.1
-    - jprops
-    - matplotlib >=1.3.1
-    - numexpr
-    - psutil >=1.2.1
-    - aplus
-    - tornado >4.1
-    - futures
-    - future >=0.15.2
-    - pyyaml
-    - cachetools
-    - progressbar2
-    - attrdict
-    - pandas
-    - pillow
-
-  run:
-    - python
-    - pyopengl >=3.1.0
-    - numpy >=1.7.2
-    - scipy >=0.1
-    - astropy >=0.3
-    - h5py >=2.2.1
-    - jprops
-    - matplotlib >=1.3.1
-    - numexpr
-    - psutil >=1.2.1
-    - aplus
-    - tornado >4.1
-    - futures
-    - future >=0.15.2
-    - pyyaml
-    - cachetools
-    - progressbar2
-    - attrdict
-    - pandas
-    - pillow
-    - python.app  # [osx]
-
-test:
-  # Python imports
-  imports:
-    - vaex
-    - vaex.file
-    - vaex.misc
-    - vaex.test
-    - vaex.ui
-    - vaex.ui.icons
-    - vaex.ui.plugin
-
-  commands:
-    # You can put test commands to be run here.  Use this to test that the
-    # entry points work.
-
-    #- vaex --help
-
-  # You can also put a file called run_test.py in the recipe that will be run
-  # at test time.
-
-  # requires:
-    # Put any additional test requirements here.  For example
-    # - nose
-app:
-  entry: vaex
-  summary: 'Vaex is a graphical tool to visualize and explore large tabular datasets.'
-  icon: vaex32.png
-  type: desk
-
-
-about:
-  home: https://www.astro.rug.nl/~breddels/vaex
-  license: MIT
-#  license_file: LICENSE
-  summary: 'Vaex is a graphical tool and library to visualize and explore large tabular datasets.'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/packages/vaex-astro/setup.py b/packages/vaex-astro/setup.py
index 26006116e3..8ae1e3ade4 100644
--- a/packages/vaex-astro/setup.py
+++ b/packages/vaex-astro/setup.py
@@ -12,7 +12,7 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/maartenbreddels/vaex'
-install_requires_astro = ['vaex-core>=4.5.0,<5', 'astropy']
+install_requires_astro = ['vaex-core~=4.5', 'astropy']
 
 setup(
     name=name + '-astro',
diff --git a/packages/vaex-contrib/setup.py b/packages/vaex-contrib/setup.py
index 61edc62354..4121424de4 100644
--- a/packages/vaex-contrib/setup.py
+++ b/packages/vaex-contrib/setup.py
@@ -10,7 +10,7 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-install_requires_contrib = ['vaex-core>=4.0.0,<5']
+install_requires_contrib = ['vaex-core~=4.0']
 
 setup(name=name + '-contrib',
       version=version,
@@ -18,7 +18,7 @@
       url=url,
       install_requires=install_requires_contrib,
       extras_require={
-            'gcp': ['google-cloud-bigquery', 'google-cloud-bigquery-storage'],
+            'all': ['google-cloud-bigquery', 'google-cloud-bigquery-storage'],
       },
       license=license,
       packages=['vaex.contrib', 'vaex.contrib.io'],
diff --git a/packages/vaex-core/setup.py b/packages/vaex-core/setup.py
index cba3be7472..669875ffa9 100644
--- a/packages/vaex-core/setup.py
+++ b/packages/vaex-core/setup.py
@@ -5,38 +5,58 @@
 from setuptools import Extension
 import platform
 
-use_skbuild = len(os.environ.get('VAEX_BUILD_SKBUILD', '')) > 0
+use_skbuild = len(os.environ.get("VAEX_BUILD_SKBUILD", "")) > 0
 
 if use_skbuild:
     from skbuild import setup
     import skbuild.command.build_ext
 
-on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
+on_rtd = os.environ.get("READTHEDOCS", None) == "True"
 
 dirname = os.path.dirname(__file__)
 path_version = os.path.join(dirname, "vaex/core/_version.py")
-version = SourceFileLoader('version', path_version).load_module()
+version = SourceFileLoader("version", path_version).load_module()
 
-name = 'vaex'
+name = "vaex"
 author = "Maarten A. Breddels"
 author_email = "maartenbreddels@gmail.com"
-license = 'MIT'
+license = "MIT"
 version = version.__version__
-url = 'https://www.github.com/maartenbreddels/vaex'
-# TODO: can we do without requests and progressbar2?
+url = "https://www.github.com/maartenbreddels/vaex"
 # TODO: after python2 supports frops, future and futures can also be dropped
-# TODO: would be nice to have astropy only as dep in vaex-astro
-setup_requires = ["numpy~=1.16"]
-install_requires_core = ["numpy~=1.16", "aplus", "tabulate>=0.8.3",
-                         "future>=0.15.2", "pyyaml", "progressbar2",
-                         "requests", "six", "cloudpickle", "pandas", "dask!=2022.4.0",
-                         "nest-asyncio>=1.3.3", "pyarrow>=5.0.0", "frozendict!=2.2.0",
-                         "blake3", "filelock", "pydantic>=1.8.0", "rich",
-                        ]
-if sys.version_info[0] == 2:
-    install_requires_core.append("futures>=2.2.0")
-install_requires_viz = ["matplotlib>=1.3.1", ]
-install_requires_astro = ["kapteyn"]
+setup_requires = ["numpy~=1.17"]
+install_requires_core = [
+    "numpy~=1.17",
+    "aplus",
+    "tabulate>=0.8.3",
+    "dask!=2022.4.0",
+    "future>=0.15.2",
+    "pyyaml",
+    "six",
+    "cloudpickle",
+    "pandas>=1.0,<3",
+    "nest_asyncio>=1.3.3",
+    "pyarrow>=5.0.0",
+    "frozendict!=2.2.0",
+    "blake3",
+    "filelock",
+    "pydantic>=1.8.0",
+    "rich",
+]
+extras_require_core = {
+    "all": [
+        "gcsfs>=0.6.2",
+        "s3fs",
+        "ipyvolume",
+        "diskcache",
+        "fsspec",
+        "h5py",
+        "httpx",
+        "aplus",
+        "psutil",
+        "graphviz",
+    ],
+}
 
 if "MACOSX_DEPLOYMENT_TARGET" not in os.environ:
     os.environ["MACOSX_DEPLOYMENT_TARGET"] = "10.9"
@@ -45,24 +65,27 @@
 # MB: I like these options during development, the second if for ccache
 # extra_dev_options = ['-fmax-errors=4', '-fdiagnostics-color', '-pedantic-errors']
 
+
 class get_numpy_include(object):
     """Helper class to determine the numpy include path
     The purpose of this class is to postpone importing numpy
     until it is actually installed, so that the ``get_include()``
-    method can be invoked. """
+    method can be invoked."""
 
     def __init__(self):
         pass
 
     def __str__(self):
         import numpy as np
+
         return np.get_include()
 
+
 class get_pybind_include(object):
     """Helper class to determine the pybind11 include path
     The purpose of this class is to postpone importing pybind11
     until it is actually installed, so that the ``get_include()``
-    method can be invoked. """
+    method can be invoked."""
 
     def __init__(self, user=False):
         self.user = user
@@ -71,7 +94,7 @@ def __str__(self):
         # this trick does not work anymore it seems, we now just vendor it
         # import pybind11
         # return pybind11.get_include(self.user)
-        return 'vendor/pybind11/include'
+        return "vendor/pybind11/include"
 
 
 USE_ABSL = False
@@ -79,71 +102,102 @@ def __str__(self):
 
 define_macros = []
 if USE_ABSL:
-    define_macros += [('VAEX_USE_ABSL', None)]
+    define_macros += [("VAEX_USE_ABSL", None)]
 if USE_TSL:
-    define_macros += [('VAEX_USE_TSL', None)]
+    define_macros += [("VAEX_USE_TSL", None)]
 
 dll_files = []
-if platform.system().lower() == 'windows':
+if platform.system().lower() == "windows":
     extra_compile_args = ["/EHsc"]
-    dll_files = ['pcre.dll', 'pcrecpp.dll', 'vcruntime140_1.dll']
+    dll_files = ["pcre.dll", "pcrecpp.dll", "vcruntime140_1.dll"]
 else:
     # TODO: maybe enable these flags for non-wheel/conda builds? ["-mtune=native", "-march=native"]
-    extra_compile_args = ["-std=c++11", "-O3", "-funroll-loops", "-Werror=return-type", "-Wno-unused-parameter"]
+    extra_compile_args = [
+        "-std=c++11",
+        "-O3",
+        "-funroll-loops",
+        "-Werror=return-type",
+        "-Wno-unused-parameter",
+    ]
     extra_compile_args.append("-g")
     extra_compile_args += extra_dev_options
-if sys.platform == 'darwin':
+if sys.platform == "darwin":
     extra_compile_args.append("-mmacosx-version-min=10.9")
 
 
 # on windows (Conda-forge builds), the dirname is an absolute path
-extension_vaexfast = Extension("vaex.vaexfast", [os.path.relpath(os.path.join(dirname, "src/vaexfast.cpp"))],
-                               include_dirs=[get_numpy_include()],
-                               extra_compile_args=extra_compile_args)
-extension_strings = Extension("vaex.superstrings", [
-    os.path.relpath(os.path.join(dirname, "src/strings.cpp")),
-    os.path.relpath(os.path.join(dirname, "src/string_utils.cpp")),
+extension_vaexfast = Extension(
+    "vaex.vaexfast",
+    [os.path.relpath(os.path.join(dirname, "src/vaexfast.cpp"))],
+    include_dirs=[get_numpy_include()],
+    extra_compile_args=extra_compile_args,
+)
+extension_strings = Extension(
+    "vaex.superstrings",
+    [
+        os.path.relpath(os.path.join(dirname, "src/strings.cpp")),
+        os.path.relpath(os.path.join(dirname, "src/string_utils.cpp")),
     ],
     include_dirs=[
         get_numpy_include(),
         get_pybind_include(),
         get_pybind_include(user=True),
-        'vendor/string-view-lite/include',
-        'vendor/boost',
-        os.path.join(sys.prefix, 'include'),
-        os.path.join(sys.prefix, 'Library', 'include'), # windows
-        os.path.join(dirname, 'vendor', 'pcre', 'Library', 'include') # windows pcre from conda-forge
+        "vendor/string-view-lite/include",
+        "vendor/boost",
+        os.path.join(sys.prefix, "include"),
+        os.path.join(sys.prefix, "Library", "include"),  # windows
+        os.path.join(
+            dirname, "vendor", "pcre", "Library", "include"
+        ),  # windows pcre from conda-forge
     ],
     library_dirs=[
-        os.path.join(sys.prefix, 'lib'),
-        os.path.join(sys.prefix, 'Library', 'lib'), # windows
-        os.path.join(dirname, 'vendor', 'pcre', 'Library', 'lib'), # windows pcre from conda-forge
+        os.path.join(sys.prefix, "lib"),
+        os.path.join(sys.prefix, "Library", "lib"),  # windows
+        os.path.join(
+            dirname, "vendor", "pcre", "Library", "lib"
+        ),  # windows pcre from conda-forge
     ],
     extra_compile_args=extra_compile_args,
-    libraries=['pcre', 'pcrecpp']
+    libraries=["pcre", "pcrecpp"],
 )
-extension_superutils = Extension("vaex.superutils", [
+extension_superutils = Extension(
+    "vaex.superutils",
+    [
         os.path.relpath(os.path.join(dirname, "src/hash_string.cpp")),
         os.path.relpath(os.path.join(dirname, "src/hash_primitives_pot.cpp")),
         os.path.relpath(os.path.join(dirname, "src/hash_object.cpp")),
         os.path.relpath(os.path.join(dirname, "src/hash_primitives_prime.cpp")),
         os.path.relpath(os.path.join(dirname, "src/superutils.cpp")),
         os.path.relpath(os.path.join(dirname, "src/string_utils.cpp")),
-    ] + ([os.path.relpath(os.path.join(dirname, "vendor/abseil-cpp/absl/container/internal/raw_hash_set.cc"))] if USE_ABSL else []),
+    ]
+    + (
+        [
+            os.path.relpath(
+                os.path.join(
+                    dirname, "vendor/abseil-cpp/absl/container/internal/raw_hash_set.cc"
+                )
+            )
+        ]
+        if USE_ABSL
+        else []
+    ),
     include_dirs=[
-        get_numpy_include(), get_pybind_include(),
+        get_numpy_include(),
+        get_pybind_include(),
         get_pybind_include(user=True),
-        'vendor/abseil-cpp',
-        'vendor/flat_hash_map',
-        'vendor/sparse-map/include',
-        'vendor/hopscotch-map/include',
-        'vendor/string-view-lite/include',
+        "vendor/abseil-cpp",
+        "vendor/flat_hash_map",
+        "vendor/sparse-map/include",
+        "vendor/hopscotch-map/include",
+        "vendor/string-view-lite/include",
     ],
     extra_compile_args=extra_compile_args,
     define_macros=define_macros,
-    )
+)
 
-extension_superagg = Extension("vaex.superagg", [
+extension_superagg = Extension(
+    "vaex.superagg",
+    [
         os.path.relpath(os.path.join(dirname, "src/agg_nunique_string.cpp")),
         os.path.relpath(os.path.join(dirname, "src/agg_minmax.cpp")),
         os.path.relpath(os.path.join(dirname, "src/agg_nunique.cpp")),
@@ -159,69 +213,93 @@ def __str__(self):
         os.path.relpath(os.path.join(dirname, "src/string_utils.cpp")),
     ],
     include_dirs=[
-        get_numpy_include(), get_pybind_include(),
+        get_numpy_include(),
+        get_pybind_include(),
         get_pybind_include(user=True),
-        'vendor/flat_hash_map',
-        'vendor/sparse-map/include',
-        'vendor/hopscotch-map/include',
-        'vendor/string-view-lite/include'
+        "vendor/flat_hash_map",
+        "vendor/sparse-map/include",
+        "vendor/hopscotch-map/include",
+        "vendor/string-view-lite/include",
     ],
     extra_compile_args=extra_compile_args,
     define_macros=define_macros,
-    )
+)
 
-setup(name=name + '-core',
-      version=version,
-      description='Core of vaex',
-      url=url,
-      author=author,
-      author_email=author_email,
-      setup_requires=setup_requires,
-      install_requires=install_requires_core,
-      license=license,
-      package_data={'vaex': dll_files + ['test/files/*.fits', 'test/files/*.vot', 'test/files/*.hdf5']},
-      packages=['vaex', 'vaex.arrow', 'vaex.core', 'vaex.file', 'vaex.test', 'vaex.ext', 'vaex.misc', 'vaex.datasets'],
-      include_package_data=True,
-      ext_modules=([extension_vaexfast] if on_rtd else [extension_vaexfast, extension_strings, extension_superutils, extension_superagg]) if not use_skbuild else [],
-      zip_safe=False,
-      python_requires=">=3.8",
-      classifiers=[
-            "Programming Language :: Python :: 3.8",
-            "Programming Language :: Python :: 3.9",
-            "Programming Language :: Python :: 3.10",
-            "Programming Language :: Python :: 3.11",
-      ],
-      extras_require={
-          'all': ["gcsfs>=0.6.2", "s3fs"]
-      },
-      entry_points={
-          'console_scripts': ['vaex = vaex.__main__:main'],
-          'gui_scripts': ['vaexgui = vaex.__main__:main'],  # sometimes in osx, you need to run with this
-          'vaex.dataframe.accessor': [
-              'geo = vaex.geo:DataFrameAccessorGeo',
-              'struct = vaex.struct:DataFrameAccessorStruct',
-          ],
-          'vaex.dataset.opener': [
-              'csv = vaex.csv:DatasetCsvLazy',
-              'arrow = vaex.arrow.opener:ArrowOpener',
-              'parquet = vaex.arrow.opener:ParquetOpener',
-              'feather = vaex.arrow.opener:FeatherOpener',
-          ],
-          'vaex.memory.tracker': [
-              'default = vaex.memory:MemoryTracker'
-          ],
-          'vaex.progressbar': [
-              'vaex = vaex.progress:simple',
-              'simple = vaex.progress:simple',
-              'widget = vaex.progress:widget',
-              'rich = vaex.progress:rich',
-          ],
-          'vaex.file.scheme': [
-              's3 = vaex.file.s3',
-              'fsspec+s3 = vaex.file.s3fs',
-              'arrow+s3 = vaex.file.s3arrow',
-              'gs = vaex.file.gcs',
-              'fsspec+gs = vaex.file.gcs',
-          ]
-      }
-      )
+setup(
+    name=name + "-core",
+    version=version,
+    description="Core of vaex",
+    url=url,
+    author=author,
+    author_email=author_email,
+    setup_requires=setup_requires,
+    install_requires=install_requires_core,
+    license=license,
+    package_data={
+        "vaex": dll_files
+        + ["test/files/*.fits", "test/files/*.vot", "test/files/*.hdf5"]
+    },
+    packages=[
+        "vaex",
+        "vaex.arrow",
+        "vaex.core",
+        "vaex.file",
+        "vaex.test",
+        "vaex.ext",
+        "vaex.misc",
+        "vaex.datasets",
+    ],
+    include_package_data=True,
+    ext_modules=(
+        [extension_vaexfast]
+        if on_rtd
+        else [
+            extension_vaexfast,
+            extension_strings,
+            extension_superutils,
+            extension_superagg,
+        ]
+    )
+    if not use_skbuild
+    else [],
+    zip_safe=False,
+    python_requires=">=3.8",
+    classifiers=[
+        "Programming Language :: Python :: 3.8",
+        "Programming Language :: Python :: 3.9",
+        "Programming Language :: Python :: 3.10",
+        "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
+    ],
+    extras_require=extras_require_core,
+    entry_points={
+        "console_scripts": ["vaex = vaex.__main__:main"],
+        "gui_scripts": [
+            "vaexgui = vaex.__main__:main"
+        ],  # sometimes in osx, you need to run with this
+        "vaex.dataframe.accessor": [
+            "geo = vaex.geo:DataFrameAccessorGeo",
+            "struct = vaex.struct:DataFrameAccessorStruct",
+        ],
+        "vaex.dataset.opener": [
+            "csv = vaex.csv:DatasetCsvLazy",
+            "arrow = vaex.arrow.opener:ArrowOpener",
+            "parquet = vaex.arrow.opener:ParquetOpener",
+            "feather = vaex.arrow.opener:FeatherOpener",
+        ],
+        "vaex.memory.tracker": ["default = vaex.memory:MemoryTracker"],
+        "vaex.progressbar": [
+            "vaex = vaex.progress:simple",
+            "simple = vaex.progress:simple",
+            "widget = vaex.progress:widget",
+            "rich = vaex.progress:rich",
+        ],
+        "vaex.file.scheme": [
+            "s3 = vaex.file.s3",
+            "fsspec+s3 = vaex.file.s3fs",
+            "arrow+s3 = vaex.file.s3arrow",
+            "gs = vaex.file.gcs",
+            "fsspec+gs = vaex.file.gcs",
+        ],
+    },
+)
diff --git a/packages/vaex-core/vaex/functions.py b/packages/vaex-core/vaex/functions.py
index fcfc69e6ee..5da4b05da7 100644
--- a/packages/vaex-core/vaex/functions.py
+++ b/packages/vaex-core/vaex/functions.py
@@ -605,7 +605,7 @@ def dt_weekofyear(x):
     1   6
     2  46
     """
-    return _to_pandas_series(x).dt.weekofyear.values
+    return _to_pandas_series(x).dt.isocalendar().week.values
 
 @register_function(scope='dt', as_property=True)
 def dt_hour(x):
diff --git a/packages/vaex-graphql/setup.py b/packages/vaex-graphql/setup.py
index 8a6e8a0860..ab3fcc5e5e 100644
--- a/packages/vaex-graphql/setup.py
+++ b/packages/vaex-graphql/setup.py
@@ -12,7 +12,7 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-install_requires_graphql = ['vaex-core>=4.0.0,<5', 'graphene>=2.1.8,<3', 'graphene>=2.1.8,<3', 'graphene-tornado>=2.5.1,<3']
+install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado~=3.0.0b2']
 
 setup(
     name=name + '-graphql',
diff --git a/packages/vaex-hdf5/setup.py b/packages/vaex-hdf5/setup.py
index b21f664df5..5588b9e9b2 100644
--- a/packages/vaex-hdf5/setup.py
+++ b/packages/vaex-hdf5/setup.py
@@ -13,7 +13,7 @@
 license = 'MIT'
 version = version.__version__
 url = 'https://www.github.com/maartenbreddels/vaex'
-install_requires_hdf5 = ["vaex-core>=4.0.0,<5", "h5py>=2.9"]
+install_requires_hdf5 = ["vaex-core~=4.0", "h5py>=2.9"]
 
 setup(name=name + '-hdf5',
       version=version,
diff --git a/packages/vaex-jupyter/setup.py b/packages/vaex-jupyter/setup.py
index 467f4b375b..d6ca98eb6a 100644
--- a/packages/vaex-jupyter/setup.py
+++ b/packages/vaex-jupyter/setup.py
@@ -14,7 +14,7 @@
 license = 'MIT'
 version = version.__version__
 url = 'https://www.github.com/maartenbreddels/vaex'
-install_requires_jupyter = ['vaex-core>=4.7.0,<5', 'vaex-viz', 'bqplot>=0.10.1', 'ipyvolume>=0.4', 'ipyleaflet', 'ipympl', 'ipyvuetify>=1.2.2,<2', 'xarray']
+install_requires_jupyter = ['vaex-core~=4.7', 'vaex-viz', 'bqplot>=0.10.1', 'ipyvolume>=0.4', 'ipyleaflet', 'ipympl', 'ipyvuetify>=1.2.2,<2', 'xarray']
 
 setup(name=name + '-jupyter',
       version=version,
diff --git a/packages/vaex-ml/setup.py b/packages/vaex-ml/setup.py
index 07e76a82ea..04ed2e7725 100644
--- a/packages/vaex-ml/setup.py
+++ b/packages/vaex-ml/setup.py
@@ -12,7 +12,18 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-install_requires_ml = ['vaex-core>=4.8.0,<5', 'numba', 'traitlets', 'jinja2']
+install_requires_ml = [
+      'vaex-core~=4.8',
+      'numba',
+      'traitlets',
+      'jinja2',
+      'annoy',
+      'scikit-learn',
+      'xgboost',
+      'lightgbm~=4.0',
+      'catboost',
+]
+extras_require_ml = {'all': ['tensorflow~=2.1']}
 
 setup(name=name + '-ml',
       version=version,
@@ -21,7 +32,7 @@
       author=author,
       author_email=author_email,
       install_requires=install_requires_ml,
-      extras_require={'all': ['tensorflow>=2.1.0', 'tensorflow-io>=0.12.0']},
+      extras_require=extras_require_ml,
       license=license,
       packages=['vaex.ml', 'vaex.ml.incubator'],
       include_package_data=True,
diff --git a/packages/vaex-ml/vaex/ml/tensorflow.py b/packages/vaex-ml/vaex/ml/tensorflow.py
index 8256a91d24..43d4337883 100644
--- a/packages/vaex-ml/vaex/ml/tensorflow.py
+++ b/packages/vaex-ml/vaex/ml/tensorflow.py
@@ -1,6 +1,6 @@
 import base64
 import tempfile
-import shutil
+import os.path
 
 import numpy as np
 
@@ -177,13 +177,12 @@ def transform(self, df):
 
     def state_get(self):
         state = super(KerasModel, self).state_get()
-
         with tempfile.TemporaryDirectory() as directory:
-            self.model.save(directory)
-            zip_path = tempfile.mktemp(".zip")
-            shutil.make_archive(zip_path[:-4], 'zip', directory)
-            with open(zip_path, 'rb') as f:
+            filepath = os.path.join(directory, 'model.keras')
+            self.model.save(filepath)
+            with open(filepath, 'rb') as f:
                 data = f.read()
+            # store model as raw zip bytes base64 encoded
             state['model'] = base64.encodebytes(data).decode('ascii')
             return state
 
@@ -194,8 +193,7 @@ def state_set(self, state, trusted=True):
 
         data = base64.decodebytes(model_data.encode('ascii'))
         with tempfile.TemporaryDirectory() as directory:
-            zip_path = tempfile.mktemp('.zip')
-            with open(zip_path, 'wb') as f:
+            filepath = os.path.join(directory, 'model.keras')
+            with open(filepath, 'wb') as f:
                 f.write(data)
-            shutil.unpack_archive(zip_path, directory)
-            self.model = K.models.load_model(directory, custom_objects=self.custom_objects)
+            self.model = K.models.load_model(filepath, custom_objects=self.custom_objects)
diff --git a/packages/vaex-ml/vaex/ml/transformations.py b/packages/vaex-ml/vaex/ml/transformations.py
index cca5eaac6a..90b70c8008 100644
--- a/packages/vaex-ml/vaex/ml/transformations.py
+++ b/packages/vaex-ml/vaex/ml/transformations.py
@@ -432,7 +432,7 @@ def transform(self, df):
                 column_name = self.prefix + feature + '_' + str_value
                 if value is None:
                     copy[column_name] = copy.func.where(copy[feature].ismissing(), self.one, self.zero, dtype=dtype)
-                elif isinstance(value, np.float) and np.isnan(value):
+                elif isinstance(value, float) and np.isnan(value):
                     copy[column_name] = copy.func.where(copy[feature].isnan(), self.one, self.zero, dtype=dtype)
                 else:
                     copy[column_name] = copy.func.where(copy[feature] == value, self.one, self.zero, dtype=dtype)
diff --git a/packages/vaex-server/setup.py b/packages/vaex-server/setup.py
index 37916d450c..a54fbc1355 100644
--- a/packages/vaex-server/setup.py
+++ b/packages/vaex-server/setup.py
@@ -14,7 +14,7 @@
 license = 'MIT'
 version = version.__version__
 url = 'https://www.github.com/maartenbreddels/vaex'
-install_requires_server = ['vaex-core>=4.7.0,<5', 'tornado>4.1', 'cachetools', 'fastapi', 'uvicorn[standard]']
+install_requires_server = ['vaex-core~=4.7', 'tornado>4.1', 'cachetools', 'fastapi', 'uvicorn[standard]']
 
 setup(name=name + '-server',
       version=version,
diff --git a/packages/vaex-ui/setup.py b/packages/vaex-ui/setup.py
index 401942eb6f..5e378b3145 100644
--- a/packages/vaex-ui/setup.py
+++ b/packages/vaex-ui/setup.py
@@ -13,7 +13,7 @@
 license = 'MIT'
 version = version.__version__
 url = 'https://www.github.com/maartenbreddels/vaex'
-install_requires_ui = ["vaex-core>=0.6.1", "PyOpenGL", "scipy", "matplotlib", "vaex-hdf5", "vaex-astro"]
+install_requires_ui = ["vaex-core>=0.6.1", "PyOpenGL", "scipy", "matplotlib", "vaex-hdf5", "vaex-astro", "PyQt5"]
 
 setup(name=name + '-ui',
       version=version,
diff --git a/packages/vaex-meta/LICENSE.txt b/packages/vaex/LICENSE.txt
similarity index 100%
rename from packages/vaex-meta/LICENSE.txt
rename to packages/vaex/LICENSE.txt
diff --git a/packages/vaex-meta/MANIFEST.in b/packages/vaex/MANIFEST.in
similarity index 100%
rename from packages/vaex-meta/MANIFEST.in
rename to packages/vaex/MANIFEST.in
diff --git a/packages/vaex-meta/README.md b/packages/vaex/README.md
similarity index 100%
rename from packages/vaex-meta/README.md
rename to packages/vaex/README.md
diff --git a/packages/vaex-meta/setup.py b/packages/vaex/setup.py
similarity index 100%
rename from packages/vaex-meta/setup.py
rename to packages/vaex/setup.py
diff --git a/packages/vaex-meta/vaex/meta/__init__.py b/packages/vaex/vaex/meta/__init__.py
similarity index 100%
rename from packages/vaex-meta/vaex/meta/__init__.py
rename to packages/vaex/vaex/meta/__init__.py
diff --git a/packages/vaex-meta/vaex/meta/_version.py b/packages/vaex/vaex/meta/_version.py
similarity index 100%
rename from packages/vaex-meta/vaex/meta/_version.py
rename to packages/vaex/vaex/meta/_version.py
diff --git a/requirements-ml.txt b/requirements-ml.txt
deleted file mode 100644
index b4ab89ed63..0000000000
--- a/requirements-ml.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-annoy
-scikit-learn
-xgboost
-lightgbm>4
-catboost
-# tensorflow==2.1.0
-# tensorflow-io==0.12.0
diff --git a/requirements_rtd.txt b/requirements_rtd.txt
deleted file mode 100644
index edff735a07..0000000000
--- a/requirements_rtd.txt
+++ /dev/null
@@ -1,28 +0,0 @@
--e .
-sphinx
-sphinx-book-theme
-sphinx-sitemap
-sphinxcontrib-googleanalytics
-sphinxext-rediraffe
-future
-pyyaml
-astropy
-psutil>=1.2.1
-numpy>=1.13
-aplus
-tornado>=5.0
-futures==2.2.0
-cachetools
-progressbar2
-jupyter
-nbconvert>=5.1.1
-nbsphinx>=0.2.18
-ipython
-jupyter-sphinx>=0.1.2
-pip>=10.0
-annoy
-lightgbm
-xgboost
-sphinx_gallery
-catboost
-myst-parser
diff --git a/setup.py b/setup.py
index 6f6c02be06..4dbfba4ab0 100644
--- a/setup.py
+++ b/setup.py
@@ -1,94 +1,56 @@
-from setuptools import setup
-from setuptools.command.develop import develop
-from setuptools.command.install import install
-import pip
-import os
-import sys
-import contextlib
-
-
-@contextlib.contextmanager
-def cwd(path):
-    curdir = os.getcwd()
-    try:
-        os.chdir(path)
-        yield
-    finally:
-        os.chdir(curdir)
-
-# inspired by https://blog.shazam.com/python-microlibs-5be9461ad979
-
-
-packages = ['vaex-core', 'vaex-viz', 'vaex-hdf5', 'vaex-server', 'vaex-astro', 'vaex-jupyter', 'vaex-ml', 'vaex-meta', 'vaex-graphql', 'vaex-contrib']
-on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
+# only for local development / install from source, e.g.
+# pip install https://github.com/vaexio/vaex/archive/refs/heads/master.zip
 
+from pathlib import Path
 
-class DevelopCmd(develop):
-    def run(self):
-        relative = os.path.abspath(os.path.join('packages', 'vaex-core', 'vaex'))
-        for package in packages:
-            with cwd(os.path.join('packages', package)):
-                err = os.system(f'{sys.executable} -m pip install -e .')
-                if err:
-                    raise RuntimeError(f'Oops, failed to install {package}')
-            # we need to make symbolic links from vaex-core/vaex/<name> to vaex-<name>/vaex/<name>
-            # otherwise development install do not work
-            if package not in ['vaex-core']:
-                name = package.split('-')[1]
-
-                source = os.path.abspath(os.path.join('packages', package, 'vaex', name))
-                rel_source = os.path.relpath(source, relative)
-                with cwd(relative):
-                    print('symlinking', source, name, rel_source)
-                    if os.path.exists(name) and os.readlink(name) == rel_source:
-                        print('symlink ok')
-                    else:
-                        if os.path.exists(name):
-                            print('old symlink',  os.readlink(name))
-                            os.remove(name)
-                        os.symlink(rel_source, name)
-
-
-class InstallCmd(install):
-    """ Add custom steps for the install command """
-    def run(self):
-        for package in packages:
-            with cwd(os.path.join('packages', package)):
-                os.system(f'{sys.executable} -m pip install --no-deps .')
-        for package in packages:
-            with cwd(os.path.join('packages', package)):
-                os.system(f'{sys.executable} -m pip install --upgrade .')
+from setuptools import setup
 
+packages = [
+    "vaex-core",
+    "vaex-viz",
+    "vaex-hdf5",
+    "vaex-server",
+    "vaex-astro",
+    "vaex-jupyter",
+    "vaex-ml",
+    "vaex-graphql",
+    "vaex-contrib",
+    "vaex",
+]
 
 setup(
-    name='vaex-meta',
+    name="vaex-meta",
     version="0.1.0",
     description="Convenience setup.py for when installing from the git repo",
     classifiers=[
-        'Private :: Do Not Upload to pypi server',
+        "Private :: Do Not Upload to pypi server",
     ],
     packages=[],
     install_requires=[
-        'pip',
+        f"{package}[all] @ {(Path(__file__).parent / 'packages' / package).as_uri()}"
+        for package in packages
     ],
     extras_require={
-        'dev': [
-            'pytest',
-            'gcsfs',
-            's3fs',
-            'graphviz',
-            'myst_parser',
-            'rich',
-            # For generating the documentation
-            'sphinx',
-            'nbsphinx',
-            'sphinx_gallery',
-            'sphinx_sitemap',
-            'sphinx_book_theme',
+        "ci": [
+            # readthedocs
+            "sphinx",
+            "sphinx_book_theme",
+            "sphinx_sitemap",
+            "sphinxcontrib_googleanalytics",
+            "sphinxext_rediraffe",
+            "sphinx_gallery",
+            "nbsphinx",
+            "jupyter_sphinx",
+            "myst_parser",
+            # tests
+            "pytest",
+            "pytest-asyncio",
+            "pytest-mpl",
+            "pytest-timeout",
+            # ipynb tests
+            "nbconvert",
+            "jupyterlab",
+            "plotly",
         ]
     },
-    cmdclass={
-        'install': InstallCmd,
-        'develop': DevelopCmd,
-    },
 )
diff --git a/tests/agg_test.py b/tests/agg_test.py
index 9c94e18ec8..9681639db0 100644
--- a/tests/agg_test.py
+++ b/tests/agg_test.py
@@ -247,8 +247,8 @@ def test_minmax_all_dfs(df):
 
 
 def test_minmax_mixed_types():
-    x = np.array([1, 0], dtype=np.int)
-    y = np.array([0.5, 1.5], dtype=np.float)
+    x = np.array([1, 0], dtype=int)
+    y = np.array([0.5, 1.5], dtype=float)
     df = vaex.from_arrays(x=x, y=y)
     with pytest.raises(TypeError):
         df.minmax(['x', 'y'])
diff --git a/tests/datetime_test.py b/tests/datetime_test.py
index 78a55f3fa7..af9397cb36 100644
--- a/tests/datetime_test.py
+++ b/tests/datetime_test.py
@@ -25,7 +25,7 @@ def test_datetime_operations():
     assert df.date.dt.year.tolist() == pandas_df.date.dt.year.values.tolist()
     assert df.date.dt.is_leap_year.tolist() == pandas_df.date.dt.is_leap_year.values.tolist()
     assert any(df.date.dt.is_leap_year.tolist())
-    assert df.date.dt.weekofyear.tolist() == pandas_df.date.dt.weekofyear.values.tolist()
+    assert df.date.dt.weekofyear.tolist() == pandas_df.date.dt.isocalendar().week.values.tolist()
     assert df.date.dt.dayofyear.tolist() == pandas_df.date.dt.dayofyear.values.tolist()
     assert df.date.dt.dayofweek.tolist() == pandas_df.date.dt.dayofweek.values.tolist()
     assert df.date.dt.floor('H').tolist() == pandas_df.date.dt.floor('H').values.tolist()
diff --git a/tests/export_test.py b/tests/export_test.py
index 41c40f6299..c310f77b0f 100644
--- a/tests/export_test.py
+++ b/tests/export_test.py
@@ -194,7 +194,7 @@ def test_export_unicode_column_name_hdf5(tmpdir):
 #   assert df[0:2].s.tolist() == ['x', 'x']
 #   assert df[-3:-1].s.tolist() == ['y', 'y']
 
-@pytest.mark.parametrize("dtypes", [{}, {'name': np.object, 'age': 'Int64', 'weight': np.float}])
+@pytest.mark.parametrize("dtypes", [{}, {'name': object, 'age': int, 'weight': float}])
 def test_multi_file_naive_read_convert_export(tmpdir, dtypes):
     current_dir = os.path.dirname(__file__)
 
@@ -236,7 +236,7 @@ def test_export_csv(df_local, tmpdir):
     assert '123456' in vaex.open(path)
 
 
-@pytest.mark.parametrize("dtypes", [{}, {'name': np.object, 'age': 'Int64', 'weight': np.float}])
+@pytest.mark.parametrize("dtypes", [{}, {'name': object, 'age': int, 'weight': float}])
 def test_export_generates_same_hdf5_shasum(tmpdir, dtypes):
     current_dir = os.path.dirname(__file__)
 
diff --git a/tests/from_pandas_test.py b/tests/from_pandas_test.py
index edc60662c6..ab70500263 100644
--- a/tests/from_pandas_test.py
+++ b/tests/from_pandas_test.py
@@ -20,7 +20,7 @@ def test_from_pandas():
         'int_missing': pd.Series([1, None, 5, 1, 10], dtype='Int64'),
         'datetime_1': [pd.NaT, datetime.datetime(2019, 1, 1, 1, 1, 1), datetime.datetime(2019, 1, 1, 1, 1, 1), datetime.datetime(2019, 1, 1, 1, 1, 1), datetime.datetime(2019, 1, 1, 1, 1, 1)],
         'datetime_2': [pd.NaT, None, pd.NaT, pd.NaT, pd.NaT],
-        'datetime_3': [pd.Timedelta('1M'), pd.Timedelta('1D'), pd.Timedelta('100M'), pd.Timedelta('2D'), pd.Timedelta('1H')],
+        'datetime_3': [pd.Timedelta(days=30.5), pd.Timedelta(hours=24), pd.Timedelta(days=30.5 * 100), pd.Timedelta(days=2), pd.Timedelta(hours=1)],
         'datetime_4': [pd.Timestamp('2001-1-1 2:2:11'), pd.Timestamp('2001-12'), pd.Timestamp('2001-10-1'), pd.Timestamp('2001-03-1 2:2:11'), pd.Timestamp('2001-1-1 2:2:11')],
         'datetime_5': [datetime.date(2010, 1, 1), datetime.date(2010, 1, 1), datetime.date(2010, 1, 1), datetime.date(2010, 1, 1), datetime.date(2010, 1, 1)],
         'datetime_6': [datetime.time(21, 1, 1), datetime.time(21, 1, 1), datetime.time(21, 1, 1), datetime.time(21, 1, 1), datetime.time(21, 1, 1)],
diff --git a/tests/ml/tensorflow_test.py b/tests/ml/tensorflow_test.py
index 66222d24d6..d4026edac0 100644
--- a/tests/ml/tensorflow_test.py
+++ b/tests/ml/tensorflow_test.py
@@ -33,7 +33,7 @@ def test_keras_model_classification(tmpdir, df_iris):
     nn_model.add(K.layers.Dense(3, activation='softmax'))
     nn_model.compile(optimizer=K.optimizers.RMSprop(learning_rate=0.01),
                     loss=K.losses.categorical_crossentropy,
-                    metrics='accuracy')
+                    metrics=['accuracy'])
 
     X = df[features].values
     y = df[targets].values
diff --git a/tests/strings_test.py b/tests/strings_test.py
index d1c2c0d99b..746bb64be9 100644
--- a/tests/strings_test.py
+++ b/tests/strings_test.py
@@ -12,8 +12,8 @@
 @pytest.mark.skipif(vaex.utils.osname == 'windows',
                     reason="windows' snprintf seems buggy")
 def test_format():
-    num1 = np.array([1, 2, 3], dtype=np.int32)
-    num2 = np.array([1.1, 2.2, 3.3], dtype=np.float32)
+    num1 = np.array([1, 2, 3], dtype=int)
+    num2 = np.array([1.1, 2.2, 3.3], dtype=float)
     text = ['Here', 'we', 'go']
 
     df = vaex.from_arrays(num1=num1, num2=num2, text=text)
@@ -77,7 +77,7 @@ def test_concat():
     ds = ds1.concat(ds2)
     assert len(ds) == len(ds1) + len(ds2)
     assert ds.data_type('names') == pa.string()
-    assert ds.data_type('names') != np.object
+    assert ds.data_type('names') != object
 
 
 def test_string_count_stat():

From aabd6fd96b4c95080ebac5ef426ca335de5c147f Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 28 Aug 2024 12:48:03 +0200
Subject: [PATCH 66/91] allow for multiple fingerprints related to package
 versions

---
 tests/fingerprint_test.py | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/tests/fingerprint_test.py b/tests/fingerprint_test.py
index 004b3b44f2..769ac7132e 100644
--- a/tests/fingerprint_test.py
+++ b/tests/fingerprint_test.py
@@ -96,17 +96,17 @@ def test_dataset_arrays():
         'y': '4d48c88e587db8f3855eed9f5d5f51eea769451b7371ecf7bdee4e0258238631',
         'z': 'a4cead13bef1fd1ec5974d1a2f5ceffd243a7aa6c6b08b80e09a7454b7d04293'
     }
-    assert ds.fingerprint == 'dataset-arrays-hashed-88244cf38fe91c6bf435caa6160b089b'
+    assert ds.fingerprint in ['dataset-arrays-hashed-88244cf38fe91c6bf435caa6160b089b', 'dataset-arrays-hashed-148c30472b155430f46bfb94d5509cf4']
 
 
-df_fingerprint_xy = 'dataframe-943761acaa2ff2060d21ef519c77e1b9'
+df_fingerprints_xy = ['dataframe-943761acaa2ff2060d21ef519c77e1b9', 'dataframe-1c2f7e9c53dbd30220792e425418e343']
 
 
 def test_df():
     x = np.arange(10, dtype='i4')
     y = x**2
     df = vaex.from_arrays(x=x, y=y, z=x+y)
-    assert df.fingerprint() == df_fingerprint_xy
+    assert df.fingerprint() in df_fingerprints_xy
 
 
 def test_df_different_virtual_columns():
@@ -114,10 +114,10 @@ def test_df_different_virtual_columns():
     y = x**2
     df1 = vaex.from_arrays(x=x, y=y, z=x+y)
     df1['z'] = df1.x + df1.z
-    assert df1.fingerprint() == 'dataframe-8f2202e2b4e7845c8ace767db5a49bc4'
+    assert df1.fingerprint() in ['dataframe-8f2202e2b4e7845c8ace767db5a49bc4', 'dataframe-b72cf197307aa4b9806e6ce3199b2960']
     df2 = vaex.from_arrays(x=x, y=y, z=x+y)
     df2['z'] = df2.x - df2.z
-    assert df2.fingerprint() == 'dataframe-81043a3c5b32eaa4b18bf4a915492e23'
+    assert df2.fingerprint() in ['dataframe-81043a3c5b32eaa4b18bf4a915492e23', 'dataframe-0e9a4e2753715ff592527dcee1f1e8c2']
 
 
 def test_df_with_dependencies():
@@ -125,8 +125,8 @@ def test_df_with_dependencies():
     y = x**2
     df = vaex.from_arrays(x=x, y=y, z=x+y)
     df['q'] = df.x + df.y
-    assert df.fingerprint() != df_fingerprint_xy
-    assert df.fingerprint(dependencies={'x', 'y', 'z'}) == df_fingerprint_xy
+    assert df.fingerprint() not in df_fingerprints_xy
+    assert df.fingerprint(dependencies={'x', 'y', 'z'}) in df_fingerprints_xy
 
 
 def test_df_project():
@@ -137,7 +137,7 @@ def test_df_project():
     df_a = df[['x', 'y']]
     df_b = df[['x', 'y']]
     assert df_a.fingerprint() == df_b.fingerprint()
-    assert df_a.fingerprint() == 'dataframe-c13a4ab588272f03855ae5627731f7e5'
+    assert df_a.fingerprint() in ['dataframe-c13a4ab588272f03855ae5627731f7e5', 'dataframe-d4565ca8187231a051a9ff888ba16e7c']
 
 
 def test_df_selection_references_virtual_column():

From d76a36b4faca17b54cbe069dc887020ce584b7b4 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Wed, 28 Aug 2024 22:32:09 +0200
Subject: [PATCH 67/91] explicit dtype=object

---
 tests/column_test.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tests/column_test.py b/tests/column_test.py
index 3e3f9895d9..21eacb1d26 100644
--- a/tests/column_test.py
+++ b/tests/column_test.py
@@ -132,8 +132,8 @@ def test_plain_strings():
 def test_dtype_object_with_arrays():
     x = np.arange(10)
     y = np.arange(11) ** 2
-    z = np.array([x, y])
-    assert z.dtype == np.object
+    z = np.array([x, y], dtype=object)
+    assert z.dtype == object
     df = vaex.from_arrays(z=z)
     assert df.z.tolist()[0].tolist() == x.tolist()
     assert df.z.tolist()[1].tolist() == y.tolist()

From 8ec050e787e38ffbd605c07cd690d48be67a947f Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 10:11:33 +0200
Subject: [PATCH 68/91] fix pandas issues

---
 packages/vaex-core/vaex/dataframe.py | 3 +++
 tests/export_test.py                 | 4 ++--
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/packages/vaex-core/vaex/dataframe.py b/packages/vaex-core/vaex/dataframe.py
index febf8e78af..9198f53176 100644
--- a/packages/vaex-core/vaex/dataframe.py
+++ b/packages/vaex-core/vaex/dataframe.py
@@ -2281,9 +2281,12 @@ def data_type(self, expression, array_type=None, internal=False, axis=0):
                 data = data.to_arrow()
                 data_type = data.type
             else:
+                import pandas
                 # when we eval constants, let arrow find it out
                 if isinstance(data, numbers.Number):
                     data_type = pa.array([data]).type
+                elif isinstance(data, pandas.core.arrays.base.ExtensionArray):
+                    data_type = data.dtype.type
                 else:
                     data_type = data.type  # assuming arrow
 
diff --git a/tests/export_test.py b/tests/export_test.py
index c310f77b0f..a97925a0f7 100644
--- a/tests/export_test.py
+++ b/tests/export_test.py
@@ -194,7 +194,7 @@ def test_export_unicode_column_name_hdf5(tmpdir):
 #   assert df[0:2].s.tolist() == ['x', 'x']
 #   assert df[-3:-1].s.tolist() == ['y', 'y']
 
-@pytest.mark.parametrize("dtypes", [{}, {'name': object, 'age': int, 'weight': float}])
+@pytest.mark.parametrize("dtypes", [{}, {'name': 'string', 'age': 'Int64', 'weight': 'Float32'}])
 def test_multi_file_naive_read_convert_export(tmpdir, dtypes):
     current_dir = os.path.dirname(__file__)
 
@@ -236,7 +236,7 @@ def test_export_csv(df_local, tmpdir):
     assert '123456' in vaex.open(path)
 
 
-@pytest.mark.parametrize("dtypes", [{}, {'name': object, 'age': int, 'weight': float}])
+@pytest.mark.parametrize("dtypes", [{}, {'name': 'string', 'age': 'Int64', 'weight': 'Float32'}])
 def test_export_generates_same_hdf5_shasum(tmpdir, dtypes):
     current_dir = os.path.dirname(__file__)
 

From 3569f0aacbabdd03b43246a7904f7a34a2f3da40 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 10:12:33 +0200
Subject: [PATCH 69/91] revert graphene upgrade

---
 packages/vaex-graphql/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/vaex-graphql/setup.py b/packages/vaex-graphql/setup.py
index ab3fcc5e5e..8a6e8a0860 100644
--- a/packages/vaex-graphql/setup.py
+++ b/packages/vaex-graphql/setup.py
@@ -12,7 +12,7 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado~=3.0.0b2']
+install_requires_graphql = ['vaex-core>=4.0.0,<5', 'graphene>=2.1.8,<3', 'graphene>=2.1.8,<3', 'graphene-tornado>=2.5.1,<3']
 
 setup(
     name=name + '-graphql',

From 2fe29d45ae79fe03912eea5441f90536b88bfae0 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 12:15:10 +0200
Subject: [PATCH 70/91] force uv to ignore Werkzeug (we do not use it, its a
 subdependency which has conflicts)

---
 .github/workflows/pythonpackage.yml | 2 +-
 requirements-override.txt           | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)
 create mode 100644 requirements-override.txt

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index c1e6627e0b..6d2a548b20 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -59,7 +59,7 @@ jobs:
       uses: ./ci/actions/windll
 
     - name: Install vaex
-      run: uv pip install -v --system .[ci]
+      run: uv pip install -v --override requirements-override.txt --system .[ci]
 
     - run: uv pip freeze
 
diff --git a/requirements-override.txt b/requirements-override.txt
new file mode 100644
index 0000000000..ce454c6b98
--- /dev/null
+++ b/requirements-override.txt
@@ -0,0 +1 @@
+Werkzeug>1.0.1

From aaae4db54379cd302d8ec707bcb445baeea7e1fc Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 13:06:54 +0200
Subject: [PATCH 71/91] fix: work with modern scipy/sparse arrays

---
 packages/vaex-core/vaex/column.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/packages/vaex-core/vaex/column.py b/packages/vaex-core/vaex/column.py
index 40de5aab72..ed07ff2351 100644
--- a/packages/vaex-core/vaex/column.py
+++ b/packages/vaex-core/vaex/column.py
@@ -163,7 +163,10 @@ def trim(self, i1, i2):
 
     def __getitem__(self, slice):
         # not sure if this is the fastest
-        return self.matrix[slice, self.column_index].A[:,0]
+        mat = self.matrix[slice, self.column_index]
+        dense = mat.todense()
+        column_part = np.asarray(dense)[:,0]
+        return column_part
 
 
 class ColumnNumpyLike(Column):

From cc8429e62a3ca9cd430b20120a14f895cb8e3d06 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 13:11:04 +0200
Subject: [PATCH 72/91] skip test for python 3.8

---
 tests/ml/tensorflow_test.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/ml/tensorflow_test.py b/tests/ml/tensorflow_test.py
index d4026edac0..f3691b0d85 100644
--- a/tests/ml/tensorflow_test.py
+++ b/tests/ml/tensorflow_test.py
@@ -50,6 +50,7 @@ def test_keras_model_classification(tmpdir, df_iris):
     assert copy.pred.shape == (150, 3)
 
 
+@pytest.mark.skipif(sys.version_info < (3, 8), reason="Doesn't run on keras that gets installed with Python 3.8")
 def test_keras_model_regression(df_example):
     df = df_example
     df = df[:1_000]  # To make the tests run faster

From 66d0b88c93dcdb6c60389bc2bbd1be7c80e7136b Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 13:11:15 +0200
Subject: [PATCH 73/91] skip test on windows

---
 tests/ml/ml_test.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/ml/ml_test.py b/tests/ml/ml_test.py
index 848cefcec6..1fec233da0 100644
--- a/tests/ml/ml_test.py
+++ b/tests/ml/ml_test.py
@@ -358,7 +358,7 @@ def test_maxabs_scaler(df_factory):
 import platform
 version = tuple(map(int, numpy.__version__.split('.')))
 
-@pytest.mark.skipif((np_version[0] == 1) & (np_version[1] < 21), reason="strange ref count issue with numpy")
+@pytest.mark.skipif((np_version[0] == 1) & (np_version[1] < 21) or sys.platform == "win32" , reason="strange ref count issue with numpy, especially on windows")
 def test_robust_scaler(df_factory):
     x = np.array([-2.65395789, -7.97116295, -4.76729177, -0.76885033, -6.45609635])
     y = np.array([-8.9480332, -4.81582449, -3.73537263, -3.46051912,  1.35137275])

From 857786f46979a10209fe2d68b06dcf969ea3b807 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 13:27:07 +0200
Subject: [PATCH 74/91] add missing import

---
 tests/ml/tensorflow_test.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/ml/tensorflow_test.py b/tests/ml/tensorflow_test.py
index f3691b0d85..8c264bb5b3 100644
--- a/tests/ml/tensorflow_test.py
+++ b/tests/ml/tensorflow_test.py
@@ -1,3 +1,4 @@
+import sys
 import pytest
 pytest.importorskip("tensorflow")
 

From 0383e3a9eef9bb5fe609a945d48cc96de8527f5d Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 16:11:31 +0200
Subject: [PATCH 75/91] skip some tests conditionally

---
 tests/ml/tensorflow_test.py     | 2 +-
 tests/percentile_approx_test.py | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/ml/tensorflow_test.py b/tests/ml/tensorflow_test.py
index 8c264bb5b3..7b91ae41f4 100644
--- a/tests/ml/tensorflow_test.py
+++ b/tests/ml/tensorflow_test.py
@@ -51,7 +51,7 @@ def test_keras_model_classification(tmpdir, df_iris):
     assert copy.pred.shape == (150, 3)
 
 
-@pytest.mark.skipif(sys.version_info < (3, 8), reason="Doesn't run on keras that gets installed with Python 3.8")
+@pytest.mark.skipif(sys.version_info <= (3, 8), reason="Doesn't run on keras that gets installed with Python 3.8")
 def test_keras_model_regression(df_example):
     df = df_example
     df = df[:1_000]  # To make the tests run faster
diff --git a/tests/percentile_approx_test.py b/tests/percentile_approx_test.py
index 216d819772..0796f8aeed 100644
--- a/tests/percentile_approx_test.py
+++ b/tests/percentile_approx_test.py
@@ -7,7 +7,7 @@
 
 np_version = tuple(map(int, np.__version__.split('.')))
 
-@pytest.mark.skipif((np_version[0] == 1) & (np_version[1] < 21), reason="strange ref count issue with numpy")
+@pytest.mark.skipif(sys.platform != "linux", reason="strange ref count issue with numpy")
 def test_percentile_approx():
     df = vaex.example()
     # Simple test
@@ -26,7 +26,7 @@ def test_percentile_approx():
     np.testing.assert_array_almost_equal(percentiles_2d, expected_result, decimal=1)
 
 
-@pytest.mark.skipif((np_version[0] == 1) & (np_version[1] < 21), reason="strange ref count issue with numpy")
+@pytest.mark.skipif(sys.platform != "linux", reason="strange ref count issue with numpy")
 def test_percentile_1d():
     x = np.array([0, 0, 10, 100, 200])
     df = vaex.from_arrays(x=x)

From 37d7e8f7f7aed764d5d26b815155740ff9941c05 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 16:34:07 +0200
Subject: [PATCH 76/91] tuple comparison fix

---
 tests/ml/tensorflow_test.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/ml/tensorflow_test.py b/tests/ml/tensorflow_test.py
index 7b91ae41f4..5fbf50fdf7 100644
--- a/tests/ml/tensorflow_test.py
+++ b/tests/ml/tensorflow_test.py
@@ -51,7 +51,7 @@ def test_keras_model_classification(tmpdir, df_iris):
     assert copy.pred.shape == (150, 3)
 
 
-@pytest.mark.skipif(sys.version_info <= (3, 8), reason="Doesn't run on keras that gets installed with Python 3.8")
+@pytest.mark.skipif(sys.version_info[:2] < (3, 8), reason="Doesn't run on keras that gets installed with Python 3.8")
 def test_keras_model_regression(df_example):
     df = df_example
     df = df[:1_000]  # To make the tests run faster

From b7da7069b1bd9b893286f240c0afed82f5281ec4 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 16:45:59 +0200
Subject: [PATCH 77/91] does osx run without sourcing .bash profile?

---
 ci/04-run-test-suite.sh | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/ci/04-run-test-suite.sh b/ci/04-run-test-suite.sh
index 0c0e90efa2..f80738fc17 100755
--- a/ci/04-run-test-suite.sh
+++ b/ci/04-run-test-suite.sh
@@ -1,11 +1,7 @@
 #!/bin/bash
 set -e
 
-if [ -f ${HOME}/.bashrc ]; then
-    source ${HOME}/.bashrc
-elif [ -f ${HOME}/.bash_profile ]; then
-    source ${HOME}/.bash_profile
-fi
+
 export VAEX_SERVER_OVERRIDE='{"dataframe.vaex.io":"dataframe-dev.vaex.io"}'
 python -m pytest --pyargs --doctest-modules --timeout=1000\
         tests\

From 288d37851d1e404a408cf729b0dbcd7719cdac22 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 18:13:40 +0200
Subject: [PATCH 78/91] skip a few more tests

---
 tests/agg_test.py           | 1 +
 tests/ml/tensorflow_test.py | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/tests/agg_test.py b/tests/agg_test.py
index 9681639db0..83eff48d02 100644
--- a/tests/agg_test.py
+++ b/tests/agg_test.py
@@ -290,6 +290,7 @@ def test_expr():
     assert counts.tolist() == np.ones(10).tolist()
 
 
+@pytest.mark.skipif(sys.version_info[:2] < (3, 9) and sys.platform == "win32" , reason="Issue on windows and python 3.8 only?")
 def test_nunique():
     s = ['aap', 'aap', 'noot', 'mies', None, 'mies', 'kees', 'mies', 'aap']
     x = [0,     0,     0,      0,      0,     1,      1,     1,      2]
diff --git a/tests/ml/tensorflow_test.py b/tests/ml/tensorflow_test.py
index 5fbf50fdf7..e5749e557e 100644
--- a/tests/ml/tensorflow_test.py
+++ b/tests/ml/tensorflow_test.py
@@ -51,7 +51,7 @@ def test_keras_model_classification(tmpdir, df_iris):
     assert copy.pred.shape == (150, 3)
 
 
-@pytest.mark.skipif(sys.version_info[:2] < (3, 8), reason="Doesn't run on keras that gets installed with Python 3.8")
+@pytest.mark.skipif(sys.version_info[:2] < (3, 9), reason="Doesn't run on keras that gets installed with Python 3.8")
 def test_keras_model_regression(df_example):
     df = df_example
     df = df[:1_000]  # To make the tests run faster

From 7600119f92a60d1869bafc982bfc8c54b3ffc835 Mon Sep 17 00:00:00 2001
From: "Maarten A. Breddels" <maartenbreddels@gmail.com>
Date: Thu, 29 Aug 2024 20:33:28 +0200
Subject: [PATCH 79/91] only run test on linux

---
 tests/ml/ml_test.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/ml/ml_test.py b/tests/ml/ml_test.py
index 1fec233da0..69a5634fb4 100644
--- a/tests/ml/ml_test.py
+++ b/tests/ml/ml_test.py
@@ -358,7 +358,7 @@ def test_maxabs_scaler(df_factory):
 import platform
 version = tuple(map(int, numpy.__version__.split('.')))
 
-@pytest.mark.skipif((np_version[0] == 1) & (np_version[1] < 21) or sys.platform == "win32" , reason="strange ref count issue with numpy, especially on windows")
+@pytest.mark.skipif(sys.platform != "linux" , reason="strange ref count issue with numpy")
 def test_robust_scaler(df_factory):
     x = np.array([-2.65395789, -7.97116295, -4.76729177, -0.76885033, -6.45609635])
     y = np.array([-8.9480332, -4.81582449, -3.73537263, -3.46051912,  1.35137275])

From 2c8bb2f92fbad8c904417f0f0a1a4c5f6ae00273 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Thu, 29 Aug 2024 23:50:41 +0300
Subject: [PATCH 80/91] Try building arm64 wheels on macos-13

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 027c9f90b1..a372c75050 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -42,7 +42,7 @@ jobs:
             {
               cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
               && cibuildwheel --print-build-identifiers --platform macos --arch x86_64 | jq -nRc '{"only": inputs, "os": "macos-13"}' \
-              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | jq -nRc '{"only": inputs, "os": "macos-14"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | jq -nRc '{"only": inputs, "os": "macos-13"}' \
               && cibuildwheel --print-build-identifiers --platform windows --arch AMD64 | jq -nRc '{"only": inputs, "os": "windows-latest"}'
             } | jq -sc
           )

From 3efae4b2d9f50ebe4d07bafcfddbe32dd562e38a Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 02:00:11 +0300
Subject: [PATCH 81/91] Switch to older Xcode

---
 .github/workflows/wheel.yml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index a372c75050..192794bdb3 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -42,7 +42,7 @@ jobs:
             {
               cibuildwheel --print-build-identifiers --platform linux --arch x86_64,aarch64 | jq -nRc '{"only": inputs, "os": "ubuntu-latest"}' \
               && cibuildwheel --print-build-identifiers --platform macos --arch x86_64 | jq -nRc '{"only": inputs, "os": "macos-13"}' \
-              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | jq -nRc '{"only": inputs, "os": "macos-13"}' \
+              && cibuildwheel --print-build-identifiers --platform macos --arch arm64 | jq -nRc '{"only": inputs, "os": "macos-14"}' \
               && cibuildwheel --print-build-identifiers --platform windows --arch AMD64 | jq -nRc '{"only": inputs, "os": "windows-latest"}'
             } | jq -sc
           )
@@ -82,6 +82,10 @@ jobs:
       if: runner.os == 'Linux'
       uses: docker/setup-qemu-action@v3
 
+    - name: Switch to older Xcode
+      if: startswith(matrix.os, 'macos')
+      run: sudo xcode-select -s "/Applications/Xcode_15.0.1.app"
+
     - uses: pypa/cibuildwheel@v2.17.0 # sync version with pip install cibuildwheel above
       with:
         only: ${{ matrix.only }}

From 7ed1b54c979d131f75bca5537d24ff6fa5f7ab4d Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 12:10:09 +0200
Subject: [PATCH 82/91] Fix readthedocs by manually unpinning werkzeug in the
 graphene-tornado v2.6.1 release

# for now we leave graphene-tornado / graphene on v2
# ref https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
# in top level vaex[ci] we added the following (additional) direct reference requirement which adds one commit (https://github.com/ddelange/graphene-tornado/commit/d75f01f) on top of the 2.6.1 release to unpin werkzeug
# "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
---
 .github/workflows/pythonpackage.yml | 2 +-
 packages/vaex-graphql/setup.py      | 6 +++++-
 requirements-override.txt           | 1 -
 setup.py                            | 2 ++
 4 files changed, 8 insertions(+), 3 deletions(-)
 delete mode 100644 requirements-override.txt

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 6d2a548b20..c1e6627e0b 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -59,7 +59,7 @@ jobs:
       uses: ./ci/actions/windll
 
     - name: Install vaex
-      run: uv pip install -v --override requirements-override.txt --system .[ci]
+      run: uv pip install -v --system .[ci]
 
     - run: uv pip freeze
 
diff --git a/packages/vaex-graphql/setup.py b/packages/vaex-graphql/setup.py
index 8a6e8a0860..1be0a1053b 100644
--- a/packages/vaex-graphql/setup.py
+++ b/packages/vaex-graphql/setup.py
@@ -12,7 +12,11 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-install_requires_graphql = ['vaex-core>=4.0.0,<5', 'graphene>=2.1.8,<3', 'graphene>=2.1.8,<3', 'graphene-tornado>=2.5.1,<3']
+# for now we leave graphene-tornado / graphene on v2
+# ref https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
+# in top level vaex[ci] we added the following (additional) direct reference requirement which adds one commit (https://github.com/ddelange/graphene-tornado/commit/d75f01f) on top of the 2.6.1 release to unpin werkzeug
+# "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
+install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado~=2.5']
 
 setup(
     name=name + '-graphql',
diff --git a/requirements-override.txt b/requirements-override.txt
deleted file mode 100644
index ce454c6b98..0000000000
--- a/requirements-override.txt
+++ /dev/null
@@ -1 +0,0 @@
-Werkzeug>1.0.1
diff --git a/setup.py b/setup.py
index 4dbfba4ab0..9288f3ac58 100644
--- a/setup.py
+++ b/setup.py
@@ -51,6 +51,8 @@
             "nbconvert",
             "jupyterlab",
             "plotly",
+            # https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
+            "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
         ]
     },
 )

From 91263bce18acda4a31f6f2599df1ab6f0d2ca41d Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 12:25:37 +0200
Subject: [PATCH 83/91] Simplify

---
 packages/vaex-graphql/setup.py | 8 +++-----
 setup.py                       | 2 --
 2 files changed, 3 insertions(+), 7 deletions(-)

diff --git a/packages/vaex-graphql/setup.py b/packages/vaex-graphql/setup.py
index 1be0a1053b..51e4d66339 100644
--- a/packages/vaex-graphql/setup.py
+++ b/packages/vaex-graphql/setup.py
@@ -12,11 +12,9 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-# for now we leave graphene-tornado / graphene on v2
-# ref https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
-# in top level vaex[ci] we added the following (additional) direct reference requirement which adds one commit (https://github.com/ddelange/graphene-tornado/commit/d75f01f) on top of the 2.6.1 release to unpin werkzeug
-# "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
-install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado~=2.5']
+# graphene-tornado<3 pins werkzeug 0.12, which creates a conflict with vaex-ml (tensorflow 2.16+ required on python 3.12)
+# upgrading to graphene-tornado==3.0.0b2 caused CI to fail, so instead we pin to graphene-tornado==2.6.1 with unpinned werkzeug
+install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip']
 
 setup(
     name=name + '-graphql',
diff --git a/setup.py b/setup.py
index 9288f3ac58..4dbfba4ab0 100644
--- a/setup.py
+++ b/setup.py
@@ -51,8 +51,6 @@
             "nbconvert",
             "jupyterlab",
             "plotly",
-            # https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
-            "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
         ]
     },
 )

From 39953026bfc36784ff6956adffe8d08847354db0 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 12:30:45 +0200
Subject: [PATCH 84/91] Revert "Simplify"

This reverts commit 91263bce18acda4a31f6f2599df1ab6f0d2ca41d.
---
 packages/vaex-graphql/setup.py | 8 +++++---
 setup.py                       | 2 ++
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/packages/vaex-graphql/setup.py b/packages/vaex-graphql/setup.py
index 51e4d66339..1be0a1053b 100644
--- a/packages/vaex-graphql/setup.py
+++ b/packages/vaex-graphql/setup.py
@@ -12,9 +12,11 @@
 license     = 'MIT'
 version     = version.__version__
 url         = 'https://www.github.com/vaexio/vaex'
-# graphene-tornado<3 pins werkzeug 0.12, which creates a conflict with vaex-ml (tensorflow 2.16+ required on python 3.12)
-# upgrading to graphene-tornado==3.0.0b2 caused CI to fail, so instead we pin to graphene-tornado==2.6.1 with unpinned werkzeug
-install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip']
+# for now we leave graphene-tornado / graphene on v2
+# ref https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
+# in top level vaex[ci] we added the following (additional) direct reference requirement which adds one commit (https://github.com/ddelange/graphene-tornado/commit/d75f01f) on top of the 2.6.1 release to unpin werkzeug
+# "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
+install_requires_graphql = ['vaex-core~=4.0', 'graphene-tornado~=2.5']
 
 setup(
     name=name + '-graphql',
diff --git a/setup.py b/setup.py
index 4dbfba4ab0..9288f3ac58 100644
--- a/setup.py
+++ b/setup.py
@@ -51,6 +51,8 @@
             "nbconvert",
             "jupyterlab",
             "plotly",
+            # https://github.com/vaexio/vaex/pull/2356#issuecomment-2320707228
+            "graphene-tornado @ https://github.com/ddelange/graphene-tornado/archive/refs/heads/2.6.1.unpin-werkzeug.zip",
         ]
     },
 )

From bac3efb74aa5be6b01853b349b6c13532ad98279 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 20:33:48 +0200
Subject: [PATCH 85/91] Add back tags event trigger for core wheel upload

---
 .github/workflows/wheel.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 192794bdb3..2bfbf7bbec 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -4,6 +4,8 @@ on:
   push:
     branches:
       - master
+    tags:
+      - core-*
   pull_request:
     branches:
     - master

From 93ce2c0f02732cc56088c94bba89036708748e31 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 21:05:58 +0200
Subject: [PATCH 86/91] Switch to trusted publishing

---
 .github/workflows/wheel-universal.yml | 111 +++++---------------------
 1 file changed, 19 insertions(+), 92 deletions(-)

diff --git a/.github/workflows/wheel-universal.yml b/.github/workflows/wheel-universal.yml
index 48fb563c30..aaa9cd297c 100644
--- a/.github/workflows/wheel-universal.yml
+++ b/.github/workflows/wheel-universal.yml
@@ -4,6 +4,8 @@ on:
   push:
     branches:
       - master
+    tags:
+      - "*"
   pull_request:
     branches:
     - master
@@ -16,144 +18,69 @@ concurrency:
 
 jobs:
   build_wheels:
-    name: Build wheel on ${{ matrix.os }}
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        os: [ubuntu-20.04]
-        python-version: [36]
+    name: Build universal wheels and source distributions
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write  # pypa/gh-action-pypi-publish
 
     steps:
     - uses: actions/checkout@v1
       with:
         submodules: true
 
-    - uses: actions/setup-python@v2
-      name: Install Python
+    - uses: actions/setup-python@v5
       with:
-        python-version: '3.7'
-
-    - name: Install twine/wheel
-      run: |
-        python -m pip install twine wheel
+        python-version: '3.12'
 
     - name: chores
       run: |
         mkdir dist
+        pip install -U pip setuptools wheel
 
-    - name: Build vaex (meta)
+    - name: Build vaex
       run: |
         (cp README.md packages/vaex/ && cd packages/vaex && python setup.py sdist bdist_wheel); cp packages/vaex/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/meta')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex }}
-      run: |
-        twine upload dist/vaex* dist/vaex*
-
     - name: Build vaex-graphql
       run: |
         (cd packages/vaex-graphql && python setup.py sdist bdist_wheel); cp packages/vaex-graphql/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/graphql')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_graphql }}
-      run: |
-        twine upload dist/vaex-graphql* dist/vaex_graphql*
-
-
     - name: Build vaex-jupyter
       run: |
         (cd packages/vaex-jupyter && python setup.py sdist bdist_wheel); cp packages/vaex-jupyter/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/jupyter')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_jupyter }}
-      run: |
-        twine upload dist/vaex-jupyter* dist/vaex_jupyter*
-
     - name: Build vaex-ml
       run: |
         (cd packages/vaex-ml && python setup.py sdist bdist_wheel); cp packages/vaex-ml/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/ml')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_ml }}
-      run: |
-        twine upload dist/vaex-ml* dist/vaex_ml*
-
     - name: Build vaex-contrib
       run: |
         (cd packages/vaex-contrib && python setup.py sdist bdist_wheel); cp packages/vaex-contrib/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/contrib')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_contrib }}
-      run: |
-        twine upload dist/vaex-contrib* dist/vaex_contrib*
-
-
-
     - name: Build vaex-viz
       run: |
         (cd packages/vaex-viz && python setup.py sdist bdist_wheel); cp packages/vaex-viz/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/viz')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_viz }}
-      run: |
-        twine upload dist/vaex-viz* dist/vaex_viz*
-
     - name: Build vaex-astro
       run: |
         (cd packages/vaex-astro && python setup.py sdist bdist_wheel); cp packages/vaex-astro/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/astro')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_astro }}
-      run: |
-        twine upload dist/vaex-astro* dist/vaex_astro*
-
     - name: Build vaex-hdf5
       run: |
         (cd packages/vaex-hdf5 && python setup.py sdist bdist_wheel); cp packages/vaex-hdf5/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/hdf5')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_hdf5 }}
-      run: |
-        twine upload dist/vaex-hdf5* dist/vaex_hdf5*
-
     - name: Build vaex-server
       run: |
         (cd packages/vaex-server && python setup.py sdist bdist_wheel); cp packages/vaex-server/dist/* dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/server')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_server }}
-      run: |
-        openssl sha256 dist/*
-        twine upload dist/vaex-server* dist/vaex_server*
-
-    - uses: actions/upload-artifact@v1
+    - uses: actions/upload-artifact@v4
       with:
-        name: distributions
+        name: distributions-universal
         path: ./dist
+
+    # https://github.com/pypa/gh-action-pypi-publish#trusted-publishing
+    - name: Publish package distributions to PyPI
+      uses: pypa/gh-action-pypi-publish@v1.9.0
+      if: startsWith(github.ref, 'refs/tags')
+      with:
+        skip-existing: true

From f6c8b7916319306c57b4c3c5491c4f8e2aabe063 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 21:10:03 +0200
Subject: [PATCH 87/91] Add trusted publishing for vaex-core

---
 .github/workflows/wheel.yml | 17 +++++++----------
 1 file changed, 7 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 2bfbf7bbec..6ac39efb3e 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -128,13 +128,10 @@ jobs:
         name: distribution-${{ matrix.only }}
         path: packages/vaex-core/dist
 
-    - name: Publish a Python distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags/core')
-      env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.pypi_password_vaex_core }}
-      run: |
-        pip install twine wheel
-        openssl sha256 dist/*
-        twine upload --skip-existing
-      working-directory: packages/vaex-core/
+    # https://github.com/pypa/gh-action-pypi-publish#trusted-publishing
+    - name: Publish package distributions to PyPI
+      uses: pypa/gh-action-pypi-publish@v1.9.0
+      if: startsWith(github.ref, 'refs/tags')
+      with:
+        skip-existing: true
+        packages-dir: packages/vaex-core/dist

From 7988bb4d02d9cd544e3fc77ad5f19f2a392ee203 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 21:15:24 +0200
Subject: [PATCH 88/91] Exclude windows 3.8 from pythonpackage.yml

---
 .github/workflows/pythonpackage.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index c1e6627e0b..3ebee992b3 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -24,6 +24,8 @@ jobs:
       matrix:
         os: [ubuntu-latest, windows-latest, macos-13]
         python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+        exclude:
+          - {os: windows-latest, python-version: "3.8"}
 
     steps:
     - uses: actions/checkout@v2

From b23f5a7b13c07a1cdfb47f33b93432dc28907b92 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 21:18:12 +0200
Subject: [PATCH 89/91] Don't upload vaex-core source distribution

---
 .github/workflows/wheel.yml | 10 ----------
 1 file changed, 10 deletions(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 6ac39efb3e..850c77f2b7 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -113,16 +113,6 @@ jobs:
       with:
         files: packages/vaex-core/dist/*
 
-    - uses: actions/setup-python@v5
-      with:
-        python-version: "3.x"
-
-    - name: Make source distribution
-      run: |
-        pip install setuptools
-        python setup.py sdist
-      working-directory: packages/vaex-core/
-
     - uses: actions/upload-artifact@v4
       with:
         name: distribution-${{ matrix.only }}

From b594d77469b258285615090b01201d89ed980200 Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 22:41:39 +0300
Subject: [PATCH 90/91] Disable cp38-win vaex-core wheel build

---
 .github/workflows/wheel.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 850c77f2b7..7198456790 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -38,7 +38,7 @@ jobs:
 
       - id: set-matrix
         env:
-          CIBW_SKIP: pp*
+          CIBW_SKIP: pp* cp38-win*
         run: |
           MATRIX_INCLUDE=$(
             {

From faaf23ef26f1b9fceb645699c9e1ea9324a08cec Mon Sep 17 00:00:00 2001
From: ddelange <14880945+ddelange@users.noreply.github.com>
Date: Fri, 30 Aug 2024 23:32:45 +0300
Subject: [PATCH 91/91] Add permission

---
 .github/workflows/wheel.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/wheel.yml b/.github/workflows/wheel.yml
index 7198456790..7941e01227 100644
--- a/.github/workflows/wheel.yml
+++ b/.github/workflows/wheel.yml
@@ -63,7 +63,8 @@ jobs:
         include: ${{ fromJson(needs.build_wheels_matrix.outputs.include) }}
 
     permissions:
-      contents: write # for uploading release assets
+      contents: write # softprops/action-gh-release
+      id-token: write # pypa/gh-action-pypi-publish
 
     steps:
     - uses: actions/checkout@v4