feat: Add R package for phylo2vec #94
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This pull request introduces significant changes to integrate the R package
r-phylo2vecwith the existingphylo2vecproject. The changes include adding new dependencies, creating necessary configuration files, and implementing functions to bridge the Rust and R components.Integration of R package
r-phylo2vec:Cargo.toml: Addedr-phylo2vec/src/rustto the members list to include the new R package in the project.pixi.toml: Updated R dependencies and tasks to install R and generate documentation usingrextendr.Configuration and build setup:
r-phylo2vec/.Rbuildignore: Added.cargodirectory to ignore list.r-phylo2vec/src/Makevars,r-phylo2vec/src/Makevars.ucrt,r-phylo2vec/src/Makevars.win: Added makefiles to handle building the Rust library and linking it with R. [1] [2] [3]r-phylo2vec/src/.gitignore: Added entries to ignore build artifacts and cargo directory.Implementation of R functions:
r-phylo2vec/R/extendr-wrappers.R: Added R functions to call Rust implementations for sampling trees, converting between Newick format and Phylo2Vec vectors, and validating vectors.r-phylo2vec/src/rust/src/lib.rs: Implemented corresponding Rust functions and registered them with R usingextendr.Documentation and metadata:
r-phylo2vec/DESCRIPTION: Added package metadata, including name, version, authors, and description.r-phylo2vec/NAMESPACE: Registered dynamic library and functions for the package.r-phylo2vec/man/*.Rd: Generated documentation for the R functions. [1] [2] [3] [4]This comprehensive integration ensures that the
phylo2vecfunctionality is accessible from R, enhancing the usability and reach of the project.Related Issues
Closes #13