From d39537d1b1c7b3d920678e4db5ef13bbaa2260fd Mon Sep 17 00:00:00 2001
From: Sanjay Srikakulam <sanjaysrikakulam@gmail.com>
Date: Fri, 10 May 2024 16:30:26 +0200
Subject: [PATCH] fix alphafold env setup

---
 files/galaxy/tpv/tools.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
index db8a38ee9..9d4025cdf 100644
--- a/files/galaxy/tpv/tools.yml
+++ b/files/galaxy/tpv/tools.yml
@@ -288,7 +288,7 @@ tools:
           from random import SystemRandom
           if SystemRandom().random() < 0.10:
               entity.gpus = 1
-              entity.params.update({'singularity_run_extra_arguments': '--env ALPHAFOLD_DB=/data/db/databases/alphafold_databases,ALPHAFOLD_USE_GPU=True'})
+              entity.params['singularity_run_extra_arguments'] = '--env ALPHAFOLD_DB=/data/db/databases/alphafold_databases,ALPHAFOLD_USE_GPU=True'
         # tweak amount of requested memory depending on the AlphaFold model to be run
       - id: model_preset_multimer
         if: job.get_param_values(app).get("model_preset") == "multimer"