From e82c1bcdf1d9aba0f05b229dc8c1163497cd337b Mon Sep 17 00:00:00 2001 From: Sanjay Kumar Srikakulam Date: Thu, 18 Jul 2024 21:14:51 +0000 Subject: [PATCH] squidpy spatial tool: mount host tmp dir as containers tmp dir --- files/galaxy/tpv/tools.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml index 1f7ba5556..b11d03f06 100644 --- a/files/galaxy/tpv/tools.yml +++ b/files/galaxy/tpv/tools.yml @@ -327,8 +327,8 @@ tools: toolshed.g2.bx.psu.edu/repos/goeckslab/squidpy/squidpy_spatial/*: inherits: basic_docker_tool mem: 6 - params: - docker_run_extra_arguments: "--mount type=tmpfs,tmpfs-size=2147483648,destination=/tmp" + env: + _GALAXY_JOB_TMP_DIR: '/tmp' toolshed.g2.bx.psu.edu/repos/goeckslab/gate_finder/gate_finder/.*: inherits: basic_docker_tool toolshed.g2.bx.psu.edu/repos/goeckslab/vitessce_spatial/vitessce_spatial/.*: