diff --git a/tools/dorado/README.md b/tools/dorado/README.md index cf9393e9..da3061a7 100644 --- a/tools/dorado/README.md +++ b/tools/dorado/README.md @@ -2,12 +2,13 @@ ## Tool versions Dorado is distributed on -[DockerHub](https://hub.docker.com/r/nanoporetech/dorado/tags) by nanoporetech, -but not tagged with a version. +[DockerHub](https://hub.docker.com/r/nanoporetech/dorado/tags) by nanoporetech. +The containers are identified by sha256 hash, but not tagged with a version. -That means the hash for the current version has to be hard-coded into the -wrapper. Unfortunately you have to pull a >6 GB container and run `dorado ---version` just to check the tool version. +We can still use the containers and display the dorado version by hard-coding +both dorado version and container hash into the wrapper (see `macros.xml`). +Unfortunately you have to pull a >6 GB container and run `dorado --version` just +to check the tool version. This also prevents auto-updates of this wrapper. You can update the list of models at the same time (see below). **You must do this when you update the wrapper**. @@ -15,22 +16,23 @@ below). **You must do this when you update the wrapper**. ## Basecalling models The models are bundled in the container at `/models` and made available by the -`dorado_models.loc` file. To update the list, modify -`tool-data/dorado_models.loc.sample`. Note that if ONT remove models from the -container, doing this will also make them unavailable to Galaxy. Check the diff -before you merge. +`dorado_models.loc` file. The columns are `value`, `tool_version`, `name` and `path`. -Here's a one-liner to **update** the loc file with the models that are bundled -in the container -`nanoporetech/dorado:shac2d8bc91ca2d043fed84d06cca92aaeb62bcc1cd`. Note that you -would use the hash for the current dorado version (obtained above), and the -dorado version is manually passed to `awk`. +To update the list, modify `tool-data/dorado_models.loc.sample`. + +Because models can be added and removed, models are listed **per container** in +the loc file. + +Here's some code to **append** the models from the container with hash +`1c65eb070a9fc1d88710c4dc09b06541f96fdd28` to the loc file. ```bash -apptainer exec docker://nanoporetech/dorado:shac2d8bc91ca2d043fed84d06cca92aaeb62bcc1cd \ +export DORADO_HASH="1c65eb070a9fc1d88710c4dc09b06541f96fdd28" + +apptainer exec "docker://nanoporetech/dorado:sha${DORADO_HASH}" \ ls /models | \ - awk -v tv="0.7.1" '{print tv "_" $0 "\t" tv "\t" $0 "\t/models/" $0}' \ + awk -v hash="${DORADO_HASH}" '{print hash "_" $0 "\t" hash "\t" $0 "\t/models/" $0}' \ >> tool-data/dorado_models.loc.sample -``` \ No newline at end of file +``` diff --git a/tools/dorado/tool-data/dorado_models.loc.sample b/tools/dorado/tool-data/dorado_models.loc.sample index 581ea4a5..e84d214e 100644 --- a/tools/dorado/tool-data/dorado_models.loc.sample +++ b/tools/dorado/tool-data/dorado_models.loc.sample @@ -1,58 +1,58 @@ -0.7.1_dna_r10.4.1_e8.2_260bps_fast@v4.1.0 0.7.1 dna_r10.4.1_e8.2_260bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0 -0.7.1_dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_260bps_hac@v4.1.0 0.7.1 dna_r10.4.1_e8.2_260bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0 -0.7.1_dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_260bps_sup@v4.1.0 0.7.1 dna_r10.4.1_e8.2_260bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0 -0.7.1_dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_fast@v4.1.0 0.7.1 dna_r10.4.1_e8.2_400bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0 -0.7.1_dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_fast@v4.2.0 0.7.1 dna_r10.4.1_e8.2_400bps_fast@v4.2.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0 -0.7.1_dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_fast@v4.3.0 0.7.1 dna_r10.4.1_e8.2_400bps_fast@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.3.0 -0.7.1_dna_r10.4.1_e8.2_400bps_fast@v5.0.0 0.7.1 dna_r10.4.1_e8.2_400bps_fast@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_fast@v5.0.0 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v4.1.0 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v4.3.0 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v5.0.0 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 0.7.1 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v4.1.0 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v4.3.0 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v5.0.0 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 -0.7.1_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 0.7.1 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 -0.7.1_dna_r10.4.1_e8.2_5khz_stereo@v1.3 0.7.1 dna_r10.4.1_e8.2_5khz_stereo@v1.3 /models/dna_r10.4.1_e8.2_5khz_stereo@v1.3 -0.7.1_dna_r9.4.1_e8_fast@v3.4 0.7.1 dna_r9.4.1_e8_fast@v3.4 /models/dna_r9.4.1_e8_fast@v3.4 -0.7.1_dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 0.7.1 dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 /models/dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 -0.7.1_dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 0.7.1 dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 -0.7.1_dna_r9.4.1_e8_hac@v3.3 0.7.1 dna_r9.4.1_e8_hac@v3.3 /models/dna_r9.4.1_e8_hac@v3.3 -0.7.1_dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 0.7.1 dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 -0.7.1_dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 0.7.1 dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 -0.7.1_dna_r9.4.1_e8_sup@v3.3 0.7.1 dna_r9.4.1_e8_sup@v3.3 /models/dna_r9.4.1_e8_sup@v3.3 -0.7.1_dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 0.7.1 dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 -0.7.1_dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 0.7.1 dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 -0.7.1_dna_r9.4.1_e8_sup@v3.6 0.7.1 dna_r9.4.1_e8_sup@v3.6 /models/dna_r9.4.1_e8_sup@v3.6 -0.7.1_rna002_70bps_fast@v3 0.7.1 rna002_70bps_fast@v3 /models/rna002_70bps_fast@v3 -0.7.1_rna002_70bps_hac@v3 0.7.1 rna002_70bps_hac@v3 /models/rna002_70bps_hac@v3 -0.7.1_rna004_130bps_fast@v3.0.1 0.7.1 rna004_130bps_fast@v3.0.1 /models/rna004_130bps_fast@v3.0.1 -0.7.1_rna004_130bps_fast@v5.0.0 0.7.1 rna004_130bps_fast@v5.0.0 /models/rna004_130bps_fast@v5.0.0 -0.7.1_rna004_130bps_hac@v3.0.1 0.7.1 rna004_130bps_hac@v3.0.1 /models/rna004_130bps_hac@v3.0.1 -0.7.1_rna004_130bps_hac@v5.0.0 0.7.1 rna004_130bps_hac@v5.0.0 /models/rna004_130bps_hac@v5.0.0 -0.7.1_rna004_130bps_hac@v5.0.0_m6A@v1 0.7.1 rna004_130bps_hac@v5.0.0_m6A@v1 /models/rna004_130bps_hac@v5.0.0_m6A@v1 -0.7.1_rna004_130bps_hac@v5.0.0_pseU@v1 0.7.1 rna004_130bps_hac@v5.0.0_pseU@v1 /models/rna004_130bps_hac@v5.0.0_pseU@v1 -0.7.1_rna004_130bps_sup@v3.0.1 0.7.1 rna004_130bps_sup@v3.0.1 /models/rna004_130bps_sup@v3.0.1 -0.7.1_rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 0.7.1 rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 /models/rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 -0.7.1_rna004_130bps_sup@v5.0.0 0.7.1 rna004_130bps_sup@v5.0.0 /models/rna004_130bps_sup@v5.0.0 -0.7.1_rna004_130bps_sup@v5.0.0_m6A@v1 0.7.1 rna004_130bps_sup@v5.0.0_m6A@v1 /models/rna004_130bps_sup@v5.0.0_m6A@v1 -0.7.1_rna004_130bps_sup@v5.0.0_pseU@v1 0.7.1 rna004_130bps_sup@v5.0.0_pseU@v1 /models/rna004_130bps_sup@v5.0.0_pseU@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_fast@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_260bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_hac@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_260bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_sup@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_260bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_fast@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.2.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_fast@v4.2.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.3.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_fast@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_fast@v4.3.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_fast@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_fast@v5.0.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v4.1.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v4.3.0 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 /models/dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v5.0.0 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 /models/dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_5khz_stereo@v1.3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r10.4.1_e8.2_5khz_stereo@v1.3 /models/dna_r10.4.1_e8.2_5khz_stereo@v1.3 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_fast@v3.4 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_fast@v3.4 /models/dna_r9.4.1_e8_fast@v3.4 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 /models/dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_hac@v3.3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_hac@v3.3 /models/dna_r9.4.1_e8_hac@v3.3 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_hac@v3.3_5mCG_5hmCG@v0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_sup@v3.3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_sup@v3.3 /models/dna_r9.4.1_e8_sup@v3.3 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 /models/dna_r9.4.1_e8_sup@v3.3_5mCG@v0.1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_sup@v3.3_5mCG_5hmCG@v0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r9.4.1_e8_sup@v3.6 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 dna_r9.4.1_e8_sup@v3.6 /models/dna_r9.4.1_e8_sup@v3.6 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna002_70bps_fast@v3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna002_70bps_fast@v3 /models/rna002_70bps_fast@v3 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna002_70bps_hac@v3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna002_70bps_hac@v3 /models/rna002_70bps_hac@v3 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_fast@v3.0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_fast@v3.0.1 /models/rna004_130bps_fast@v3.0.1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_fast@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_fast@v5.0.0 /models/rna004_130bps_fast@v5.0.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v3.0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_hac@v3.0.1 /models/rna004_130bps_hac@v3.0.1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_hac@v5.0.0 /models/rna004_130bps_hac@v5.0.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v5.0.0_m6A@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_hac@v5.0.0_m6A@v1 /models/rna004_130bps_hac@v5.0.0_m6A@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v5.0.0_pseU@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_hac@v5.0.0_pseU@v1 /models/rna004_130bps_hac@v5.0.0_pseU@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v3.0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_sup@v3.0.1 /models/rna004_130bps_sup@v3.0.1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 /models/rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_sup@v5.0.0 /models/rna004_130bps_sup@v5.0.0 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v5.0.0_m6A@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_sup@v5.0.0_m6A@v1 /models/rna004_130bps_sup@v5.0.0_m6A@v1 +1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v5.0.0_pseU@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna004_130bps_sup@v5.0.0_pseU@v1 /models/rna004_130bps_sup@v5.0.0_pseU@v1