From bf27afb240d333d3fe5f471350926c06a0485855 Mon Sep 17 00:00:00 2001
From: "michael.dsilva" <michael.dsilva@aarnet.edu.au>
Date: Fri, 13 Sep 2024 16:29:01 +1000
Subject: [PATCH] add AARNet FileSender Galaxy tool

---
 tools/aarnetfilesender/README.md      |  3 ++
 tools/aarnetfilesender/filesender.xml | 40 +++++++++++++++++++++++++++
 2 files changed, 43 insertions(+)
 create mode 100644 tools/aarnetfilesender/README.md
 create mode 100644 tools/aarnetfilesender/filesender.xml

diff --git a/tools/aarnetfilesender/README.md b/tools/aarnetfilesender/README.md
new file mode 100644
index 00000000..2a6eb676
--- /dev/null
+++ b/tools/aarnetfilesender/README.md
@@ -0,0 +1,3 @@
+# AARNet FileSender
+
+This is a wrapper for AARNet's FileSender, using the FileSender CLI tool.
diff --git a/tools/aarnetfilesender/filesender.xml b/tools/aarnetfilesender/filesender.xml
new file mode 100644
index 00000000..7d7d1c75
--- /dev/null
+++ b/tools/aarnetfilesender/filesender.xml
@@ -0,0 +1,40 @@
+<?xml version="1.0"?>
+
+<tool id="aarnet_filesender" name="AARNet FileSender" version="3.0.0" workflow_compatible="true">
+    <requirements>
+        <requirement type="package" version="3.0.0">filesendercli</requirement>
+    </requirements>
+    <command><![CDATA[
+
+#set $apiuser = $__user__.extra_preferences.get('aarnet_filesender_account|username', "").strip()
+#set $apikey = $__user__.extra_preferences.get('aarnet_filesender_account|apikey', "").strip()
+
+mkdir filestosend &&
+
+#for $file in $data
+    ln -s "$file" "filestosend/${file.element_identifier}" &&
+#end for
+
+filesender -p -u '$apiuser' -a '$apikey' -b https://filesender.aarnet.edu.au/rest.php -f "galaxy-no-reply@usegalaxy.org.au" -r '$to' filestosend >$output 2>&1
+
+    ]]></command>
+    <inputs>
+        <param name="data" type="data" multiple="true" optional="false" label="Datasets to be sent:" />
+        <param name="to" type="text" optional="false" label="Email address of recipent:"><sanitizer sanitize="False"/></param>
+    </inputs>
+    <outputs>
+        <data name="output" type="data" format="txt" hidden="false"/>
+    </outputs>
+    <help>
+**What it does**
+        Send dataset(s) from Galaxy to anyone via AARNet's FileSender service.
+
+**Remarks**
+        This tool leverages AARNet's FileSender (https://filesender.aarnet.edu.au)
+        to send files out of Galaxy.
+
+        If selecting multiple datasets, make sure each dataset is named
+        differently; otherwise, only one copy of the selected datasets will be
+        sent.
+    </help>
+</tool>