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An analysis on Plasmid conjugation for within-patient plasmid diversity

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ukhsa-collaboration/within-patient-pOXA48-conjugation

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Plasmid conjugation drives within-patient plasmid diversity

Fan Grayson, Toby Nonnenmacher, Leo Loman, Alice Ledda

Overview

This repository contains some scripts to help analyse data from short-read DNA sequences from plasmid DNA. Specifically, the analysis has a focus on exploring horizontal and vertical transfer of a gene linked with anti-microbial resistance (OXA-48).

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An analysis on Plasmid conjugation for within-patient plasmid diversity

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