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corresponding ebola test needs to change #60

corresponding ebola test needs to change

corresponding ebola test needs to change #60

name: create PyGOM distributions
on:
push:
branches:
- master
- dev
- feature/*
- bugfix/*
tags:
- 'v*.*.*'
pull_request:
branches:
- master
- dev
jobs:
build_wheels:
name: Build wheels on ${{ matrix.platform_id }} for Python v${{ matrix.python[1] }}
runs-on: ${{ matrix.os }}
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
include:
# Window 64 bit
- os: windows-latest
python: [cp39, "3.9"]
platform_id: win_amd64
- os: windows-latest
python: [cp310, "3.10"]
platform_id: win_amd64
- os: windows-latest
python: [cp311, "3.11"]
platform_id: win_amd64
- os: windows-latest
python: [cp312, "3.12"]
platform_id: win_amd64
# Python 3.9 in the manylinux build environment requires our dependencies to be
# built from source so we won't supply a wheel for 3.9 (source build will prevent lib
# version conflicts).
# NumPy on Python 3.10 only supports 64bit and is only available with manylinux2014
- os: ubuntu-latest
python: [cp310, "3.10"]
platform_id: manylinux_x86_64
manylinux_image: manylinux2014
- os: ubuntu-latest
python: [cp311, "3.11"]
platform_id: manylinux_x86_64
manylinux_image: manylinux2014
- os: ubuntu-latest
python: [cp312, "3.12"]
platform_id: manylinux_x86_64
manylinux_image: manylinux2014
steps:
- uses: actions/checkout@v4
with:
# We need quite a deep fetch so that we get the versioning right
fetch-depth: 500
# Fetch tag manually because fetch-tags option for checkout@v4 does not work
- name: Fetch tag annotations
run: |
# Fetch tag manually because fetch-tags option for checkout@v4 does not work
git fetch --force --tags --depth 1
- id: read_tag
name: Set VERSION env variable
if: ${{ startsWith(github.ref, 'refs/tags') }}
run: |
# Set tag from GitHub: using git describe for tags inside the run script
# seems not working
echo "VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
# Used to host cibuildwheel
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python[1] }}
- name: Install cibuildwheel
run: python -m pip install cibuildwheel>=2.19.2
# Need to duplicate these two lines as it seems Windows and Linux echo treats qutotes differently
- name: Build and test the wheels
if: matrix.os == 'ubuntu-latest'
run: python -m cibuildwheel --output-dir wheelhouse
env:
CIBW_BUILD: ${{ matrix.python[0] }}-${{ matrix.platform_id }}*
CIBW_TEST_COMMAND: python -W default -m unittest discover --start-directory {project}/tests
# setuptools_scm workaround for https://github.com/pypa/setuptools_scm/issues/455
CIBW_BEFORE_BUILD: ${{ github.ref == 'refs/heads/dev' && 'echo ''local_scheme = "no-local-version"'' >> pyproject.toml && git diff --color=always && git update-index --assume-unchanged pyproject.toml' || '' }}
- name: Build and test the wheels
if: matrix.os == 'windows-latest'
run: python -m cibuildwheel --output-dir wheelhouse
env:
CIBW_BUILD: ${{ matrix.python[0] }}-${{ matrix.platform_id }}*
CIBW_TEST_COMMAND: python -W default -m unittest discover --start-directory {project}/tests
# setuptools_scm workaround for https://github.com/pypa/setuptools_scm/issues/455
CIBW_BEFORE_BUILD: ${{ github.ref == 'refs/heads/dev' && 'echo local_scheme = "no-local-version" >> pyproject.toml && git diff --color=always && git update-index --assume-unchanged pyproject.toml' || '' }}
# Upload the results
- uses: actions/upload-artifact@v4
with:
name: cibw-wheels-${{ matrix.platform_id }}-${{ matrix.python[0] }}
path: ./wheelhouse/*.whl
build_sdist:
name: Build source distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
# We need quite a deep fetch so that we get the versioning right
fetch-depth: 500
# Fetch tag manually because fetch-tags option for checkout@v4 does not work
- name: Fetch tag annotations
run: |
# Fetch tag manually because fetch-tags option for checkout@v4 does not work
git fetch --force --tags --depth 1
- id: read_tag
name: Set VERSION env variable
if: ${{ startsWith(github.ref, 'refs/tags') }}
run: |
# Set tag from GitHub: using git describe for tags inside the run script
# seems not working
echo "VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
# setuptools_scm workaround for https://github.com/pypa/setuptools_scm/issues/455
- name: Disable local version identifier on develop CI
if: github.ref == 'refs/heads/dev'
run: |
echo 'local_scheme = "no-local-version"' >> pyproject.toml
git diff --color=always
git update-index --assume-unchanged pyproject.toml
- name: Build sdist
run: pipx run build --sdist
- uses: actions/upload-artifact@v4
with:
name: cibw-sdist
path: dist/*.tar.gz
upload_pypi:
name: Upload release to PyPI
needs: [build_wheels, build_sdist]
runs-on: ubuntu-latest
environment:
name: pypi
permissions:
id-token: write
steps:
- uses: actions/download-artifact@v4
with:
# unpacks all CIBW artifacts into dist/
pattern: cibw-*
path: dist
merge-multiple: true
# This is the live push to PyPI on tagging the master branch
- uses: pypa/gh-action-pypi-publish@release/v1
# Upload to PyPI on every tag starting with 'v'
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
with:
repository-url: https://upload.pypi.org/legacy/
# Upload to PyPI *testing* every dev branch commit
- uses: pypa/gh-action-pypi-publish@release/v1
# Upload to testing only if we are on the dev branch
if: github.ref == 'refs/heads/dev'
with:
# Testing only at this point
repository-url: https://test.pypi.org/legacy/