Submitting ONT sequences

[solveigmo]

Hi!
I want to submit some ONT reads to ENA using your brilliant script. I get errors because there is only one fastq file per isolate, but I'm not sure how to cope with this. I see that I can use the -F flag, but the default is already fastq. Is there any other way I can specify that there is only one fastq-file per sample?

Thanks :)