From 49571ed50792ba1baa66979432b6c888512b55fd Mon Sep 17 00:00:00 2001
From: Christoph Lehmann <christoph.lehmann@ufz.de>
Date: Fri, 26 Apr 2024 14:14:39 +0200
Subject: [PATCH 1/2] Changed pre-commit and ruff config

* Added a manual version of ruff auto-fixing all problems. Run it with:

pre-commit run --hook-stage manual

* allow "confusable" en-dash
* updated ruff version (reason: better handling of semicolons in Jupyter
  notebook code cells)
---
 .pre-commit-config.yaml | 15 +++++++++++++--
 pyproject.toml          |  4 ++++
 2 files changed, 17 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e822be2e6b7..ead99e4cdfd 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -79,12 +79,23 @@ repos:
         args: [sync]
       - id: vale
         args: [--output=line, --minAlertLevel=error]
-  - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: "v0.1.0"
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "v0.4.2"
     hooks:
       - id: ruff
         types_or: [python, pyi, jupyter]
         args: [--show-source]
+  # A variant of the ruff hook above that automatically applies proposed fixes.
+  # Runs only manually.
+  # Run this hook (and all other manual hooks if any) with:
+  # pre-commit run --hook-stage manual
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "v0.4.2"
+    hooks:
+      - id: ruff
+        types_or: [python, pyi, jupyter]
+        args: [--show-source, --fix, --exit-non-zero-on-fix]
+        stages: [manual]
   # Enable on demand, run with
   #     pre-commit run --all-files clang-format
   #
diff --git a/pyproject.toml b/pyproject.toml
index ab5aa9e0521..280586d883c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -134,6 +134,10 @@ exclude = ["scripts/doc", "*ci-skip*"]
 flake8-unused-arguments.ignore-variadic-names = true
 line-length = 80
 
+[tool.ruff.lint]
+# allow en-dash
+allowed-confusables = ["–"]
+
 [tool.ruff.per-file-ignores]
 "tests/**" = ["T20"]
 "*.ipynb" = ["E402"] # Top-level imports

From bfbbf4b2eb9cfc826ac0a93b0699624580c83cb4 Mon Sep 17 00:00:00 2001
From: Lars Bilke <lars.bilke@ufz.de>
Date: Mon, 6 May 2024 10:51:56 +0200
Subject: [PATCH 2/2] [NL] Fixed missing include.

---
 NumLib/TimeStepping/TimeStep.h | 1 +
 1 file changed, 1 insertion(+)

diff --git a/NumLib/TimeStepping/TimeStep.h b/NumLib/TimeStepping/TimeStep.h
index d712d4453a9..ce975f36f91 100644
--- a/NumLib/TimeStepping/TimeStep.h
+++ b/NumLib/TimeStepping/TimeStep.h
@@ -13,6 +13,7 @@
 #pragma once
 
 #include <cstddef>
+#include <limits>
 
 namespace NumLib
 {