r-bio.yaml

name: r-bio
channels:
- conda-forge
- bioconda
- r
- nodefaults
dependencies:
- bioconda::bioconductor-biomart==2.42.0
- bioconda::bioconductor-deseq2==1.26.0
- bioconda::bioconductor-compcoder==1.22.0
- bioconda::bioconductor-org.mm.eg.db==3.10.0
- bioconda::r-wgcna==1.69
- conda-forge::r-igraph==1.2.6
- r::r-netindices==1.4.4
- conda-forge::python=3.8
- conda-forge::pip==21.0.1
- conda-forge::r-vegan==2.5_6
- r::r-nhanes==2.1.0
- bioconda::bowtie2==2.4.2
- bioconda::plink==1.90b6.18
- bioconda::homer==4.11
- conda-forge::ipykernel==5.5.0
- bioconda::bedtools==2.30.0
- bioconda::samtools==1.11
- bioconda::bcftools==1.11
- bioconda::subread==2.0.1
- bioconda::htseq==0.13.5
- bioconda::bwa==0.7.17
- bioconda::bwa-mem2==2.2
- bioconda::star==2.7.8a
- bioconda::fastqc==0.11.9
- bioconda::samtools==1.11
- bioconda::multiqc==1.10
- bioconda::bowtie2==2.4.2
- bioconda::cnvkit==0.9.8
- conda-forge::zip==3.0
- bioconda::varscan==2.4.4
- bioconda::gatk4==4.2.0.0
- bioconda::admixture==1.3.0
- bioconda::bioconductor-apeglm==1.8.0
- conda-forge::r-irkernel==1.1.1
- conda-forge::r-palmerpenguins==0.1.0
- conda-forge::r-ggridges==0.5.3
- bioconda::bioconductor-biomart==2.42.0
- conda-forge::r-reshape2==1.4.4
- conda-forge::r-tidyverse==1.3.1