Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Launch SomaticSniper + Battenberg + DPClust seeds [HNSC multi-region] #68

Open
Tracked by #81
philsteinberg opened this issue Nov 15, 2022 · 0 comments
Open
Tracked by #81

Launch SomaticSniper + Battenberg + DPClust seeds [HNSC multi-region] #68

philsteinberg opened this issue Nov 15, 2022 · 0 comments
Labels
Task A step of progress
Milestone
Run pipeline-call...

Comments

@philsteinberg
Copy link
Contributor

philsteinberg commented Nov 15, 2022 •
edited
Loading

Patients with complete samples:

  • ILHNLNEV000001
  • ILHNLNEV000002
  • ILHNLNEV000003
  • ILHNLNEV000006
  • ILHNLNEV000007
  • ILHNLNEV000012
  • ILHNLNEV000014

SomaticSniper input: /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/data/SNV/somaticsniper/recsnv/vcfs/
Battenberg input: /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/data/Battenberg/refit_dpnorm/

submission script (temporary):
/hot/users/psteinberg/work-code/mr_somaticsniper_battenberg_dpclust_submission_script.sh

logs: /hot/project/method/AlgorithmEvaluation/BNCH-000082-SRCRNDSeed/pipeline-call-src/run-somaticsniper-battenberg-dpclust/logs/
@philsteinberg philsteinberg changed the title Launch SomaticSniper + Battenberg + DPClust seeds [HNSC multi-sample] Launch SomaticSniper + Battenberg + DPClust seeds [HNSC multi-region] Nov 16, 2022
@philsteinberg philsteinberg added this to the Run pipeline-call-SRC milestone Nov 16, 2022
@philsteinberg philsteinberg added the bug Something isn't working label Nov 16, 2022
@philsteinberg philsteinberg mentioned this issue Dec 5, 2022
Open
6 tasks
@philsteinberg philsteinberg added Task A step of progress and removed bug Something isn't working labels Dec 5, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
Task A step of progress
Projects
None yet
Milestone
Run pipeline-call-SRC
Development

No branches or pull requests
1 participant
@philsteinberg