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Launch Strelka2 + Battenberg + DPClust seeds [HNSC multi-region] #66

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Tracked by #81
philsteinberg opened this issue Nov 15, 2022 · 0 comments
Open
Tracked by #81

Launch Strelka2 + Battenberg + DPClust seeds [HNSC multi-region] #66

philsteinberg opened this issue Nov 15, 2022 · 0 comments
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Task A step of progress
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Run pipeline-call...

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@philsteinberg
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philsteinberg commented Nov 15, 2022 •
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Submission script (temporary):

  • /hot/user/psteinberg/work-code/mr_strelka2_battenberg_dpclust_submission_script.sh

Patients with complete samples:

  • ILHNLNEV000001
  • ILHNLNEV000002
  • ILHNLNEV000003
  • ILHNLNEV000006
  • ILHNLNEV000007
  • ILHNLNEV000012
  • ILHNLNEV000014

Strelka2 input: /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/data/SNV/strelka2/recsnv/vcfs/
Battenberg input: /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/data/Battenberg/refit_dpnorm/

submission script (temporary):
/hot/users/psteinberg/work-code/mr_strelka2_battenberg_dpclust_submission_script.sh

logs: /hot/project/method/AlgorithmEvaluation/BNCH-000082-SRCRNDSeed/pipeline-call-src/run-strelka2-battenberg-dpclust/logs/
@philsteinberg philsteinberg added the bug Something isn't working label Nov 16, 2022
@philsteinberg philsteinberg changed the title Launch Strelka2 + Battenberg + DPClust seeds [HNSC multi-sample] Launch Strelka2 + Battenberg + DPClust seeds [HNSC multi-region] Nov 16, 2022
@philsteinberg philsteinberg added this to the Run pipeline-call-SRC milestone Nov 16, 2022
@philsteinberg philsteinberg mentioned this issue Dec 5, 2022
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@philsteinberg philsteinberg added Task A step of progress and removed bug Something isn't working labels Dec 5, 2022
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