From 2e3ceb8f5824a6b1c91b73e03c15667ad4ba6aa1 Mon Sep 17 00:00:00 2001
From: Rabab Fatima <rfatima@uab.edu>
Date: Wed, 24 Apr 2024 16:53:40 -0500
Subject: [PATCH] Linted, Formatted and fixed some function names.

---
 backend/src/core/annotation.py      | 16 +++++++++-------
 backend/src/core/annotation_task.py | 26 ++++++++++++++------------
 backend/src/core/annotation_unit.py | 10 +++++-----
 3 files changed, 28 insertions(+), 24 deletions(-)

diff --git a/backend/src/core/annotation.py b/backend/src/core/annotation.py
index 275451ee..cd2d50b1 100644
--- a/backend/src/core/annotation.py
+++ b/backend/src/core/annotation.py
@@ -103,15 +103,17 @@ def process_tasks(annotation_queue, genomic_unit_collection):  # pylint: disable
                     # check if the version is latest
                     latest = False
                     if annotation_unit.version is latest:
-                        logger.info('%s Annotation Exists with Latest Version...', format_annotation_logging(annotation_unit))
+                        logger.info(
+                            '%s Annotation Exists with Latest Version...', format_annotation_logging(annotation_unit)
+                        )
                         ready = True
                     else:
-                        
-                    # determine as version_annotation_type
-                    # create version_annotation_task
-                    # send version-url and attribute
-                    # put this in background task
-                    
+
+                        # determine as version_annotation_type
+                        # create version_annotation_task
+                        # send version-url and attribute
+                        # put this in background task
+
                         ready = False
                     continue
 
diff --git a/backend/src/core/annotation_task.py b/backend/src/core/annotation_task.py
index 63e7ddd4..9fc96410 100644
--- a/backend/src/core/annotation_task.py
+++ b/backend/src/core/annotation_task.py
@@ -186,24 +186,29 @@ def build_url(self):
         Builds the URL from the base_url and then appends the list of query parameters for the list of datasets.
         """
         return self.aggregate_string_replacements(self.dataset['url'])
-    
+
+
 class VersionAnnotationTask(AnnotationTaskInterface):
     """An annotation task that gets the version of the annotation"""
 
-    def __init__(self, genomic_unit_json: dict):
+    def __init__(self, genomic_unit_json):
         """initializes the task with the genomic_unit"""
-        AnnotationTaskInterface.__init__(genomic_unit_json)
+        AnnotationTaskInterface.__init__(self, genomic_unit_json)
+
+    def annotate(self):
+        """placeholder for annotating a genomic unit with version"""
+        return "not-implemented"
 
     def versioning_by_method(self, versioning_type):
         """Gets version by versioning type and returns the version data to the annotation unit"""
         version = ""
 
         if versioning_type == "rest":
-            version = self.get_version_from_rest()
+            version = self.get_annotation_version_from_rest()
         elif versioning_type == "rosalution":
-            version = self.get_version_from_rosalution()
+            version = self.get_annotation_version_from_rosalution()
         elif versioning_type == "date":
-            version = self.get_version_from_date()
+            version = self.get_annotation_version_from_date()
         return version
 
     def get_annotation_version_from_rest(self):
@@ -211,13 +216,13 @@ def get_annotation_version_from_rest(self):
         version_from_rest = ""
         # getting version from rest
         return version_from_rest
-    
+
     def get_annotation_version_from_rosalution(self):
         """Gets version for rosalution type and returns the version data"""
         version_from_rosalution = ""
         # getting version from rosalution
         return version_from_rosalution
-    
+
     def get_annotation_version_from_date(self):
         """Gets version for date type and returns the version data"""
         version_from_date = ""
@@ -232,10 +237,7 @@ class AnnotationTaskFactory:
     """
 
     tasks = {
-        "http": HttpAnnotationTask,
-        "csv": CsvAnnotationTask,
-        "none": NoneAnnotationTask,
-        "forge": ForgeAnnotationTask,
+        "http": HttpAnnotationTask, "csv": CsvAnnotationTask, "none": NoneAnnotationTask, "forge": ForgeAnnotationTask,
         "version": VersionAnnotationTask
     }
 
diff --git a/backend/src/core/annotation_unit.py b/backend/src/core/annotation_unit.py
index 2cea3903..75989efc 100644
--- a/backend/src/core/annotation_unit.py
+++ b/backend/src/core/annotation_unit.py
@@ -47,12 +47,12 @@ def to_name_string(self):
         """
         return f"{self.get_genomic_unit} for {self.get_dataset}"
 
-    def set_latest_version(self, version_info):
-        self.version = version_info
+    def set_latest_version(self, version_details):
+        """Sets the Annotation Unit with the version details"""
+        self.version = version_details
 
     def version_exists(self):
+        """Checks if the Annotation Unit is versioned or not"""
         if self.version == "":
             return True
-        else:
-            return False
-        
\ No newline at end of file
+        return False