From 1d9e35bb0f7ce7f608e99f9b708a7680713ca101 Mon Sep 17 00:00:00 2001
From: Angelina Uno-Antonison <ange.unoantonison@gmail.com>
Date: Wed, 13 Sep 2023 09:58:09 -0500
Subject: [PATCH] Updated the importer to include the new ACMG expected fields
 along with Decision that was missed (#137)

---
 backend/src/core/phenotips_importer.py  |  4 ++
 etc/fixtures/initial-seed/analyses.json | 87 ++++++++++++++++++++++++-
 2 files changed, 90 insertions(+), 1 deletion(-)

diff --git a/backend/src/core/phenotips_importer.py b/backend/src/core/phenotips_importer.py
index 85b9fb37..fb51f8cf 100644
--- a/backend/src/core/phenotips_importer.py
+++ b/backend/src/core/phenotips_importer.py
@@ -76,6 +76,10 @@ def import_analysis_data(self, phenotips_json_data, phenotips_variants, phenotip
                     {"type": "section-text", "field": 'Nominator', "value": []},
                     {"type": "section-text", "field": 'Participant', "value": []},
                     {"type": "section-text", "field": 'Phenotype', "value": []},
+                    {"type": "section-text", "field": 'ACMG Classification', "value": []},
+                    {"type": "section-text", "field": 'ACMG Classification Criteria', "value": []},
+                    {"type": "section-text", "field": 'ACMG Criteria To Add', "value": []},
+                    {"type": "section-text", "field": 'Decision', "value": []},
                 ]
             }, {
                 "header": 'Clinical History', "content": [
diff --git a/etc/fixtures/initial-seed/analyses.json b/etc/fixtures/initial-seed/analyses.json
index a2790650..7c44d22e 100644
--- a/etc/fixtures/initial-seed/analyses.json
+++ b/etc/fixtures/initial-seed/analyses.json
@@ -54,6 +54,21 @@
             "field": "Phenotype",
             "value": []
           },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification Criteria",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Criteria To Add",
+            "value": []
+          },
           {
             "type": "section-text",
             "field": "Decision",
@@ -275,6 +290,21 @@
             "field": "Phenotype",
             "value": []
           },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification Criteria",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Criteria To Add",
+            "value": []
+          },
           {
             "type": "section-text",
             "field": "Decision",
@@ -487,6 +517,21 @@
             "field": "Phenotype",
             "value": []
           },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification Criteria",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Criteria To Add",
+            "value": []
+          },
           {
             "type": "section-text",
             "field": "Decision",
@@ -711,6 +756,21 @@
             "field": "Phenotype",
             "value": ["Postural instability, delayed gross motor development, generalized hypotonia, generalized hypotonia due to defect at the neuromuscular junction, motor delay, abnormality of the dentate nucleus, abnormality of the periventricular white matter, poor motor coordination, and congenital nystagmus "]
           },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification Criteria",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Criteria To Add",
+            "value": []
+          },
           {
             "type": "section-text",
             "field": "Decision",
@@ -910,6 +970,21 @@
             "field": "Phenotype",
             "value": []
           },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification Criteria",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Criteria To Add",
+            "value": []
+          },
           {
             "type": "section-text",
             "field": "Decision",
@@ -1168,7 +1243,17 @@
           },
           {
             "type": "section-text",
-            "field": "Decision",
+            "field": "ACMG Classification",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Classification Criteria",
+            "value": []
+          },
+          {
+            "type": "section-text",
+            "field": "ACMG Criteria To Add",
             "value": []
           },
           {