patch.txt

diff --git a/train_RNN/make_smile.py b/train_RNN/make_smile.py
index b9d6e02..1f0bc46 100755
--- a/train_RNN/make_smile.py
+++ b/train_RNN/make_smile.py

@@ -145,8 +145,8 @@ def zinc_logp(smile):
 
     ma=6.66134
 
-    print max(logp_value)
-    print logp_value
+    print(max(logp_value))
+    print(logp_value)
 
 
 def zinc_data_with_bracket_original():
@@ -154,7 +154,7 @@ def zinc_data_with_bracket_original():
     sen_space=[]
     #f = open('/Users/yang/smiles.csv', 'rb')
     #f = open('/Users/yang/LSTM-chemical-project/smile_trainning.csv', 'rb')
-    f = open('../data/250k_rndm_zinc_drugs_clean.smi', 'rb')
+    f = open('../data/250k_rndm_zinc_drugs_clean.smi', 'r')
 
     reader = csv.reader(f)
     for row in reader:
diff --git a/train_RNN/train_RNN.py b/train_RNN/train_RNN.py
index 5436c78..f17bba7 100644
--- a/train_RNN/train_RNN.py
+++ b/train_RNN/train_RNN.py
@@ -237,8 +237,8 @@ if __name__ == "__main__":
     smile=zinc_data_with_bracket_original()
     valcabulary,all_smile=zinc_processed_with_bracket(smile)
     #valcabulary,all_smile=bond_atom(val,smile_without_bound)
-    print valcabulary
-    print len(all_smile)
+    print(valcabulary)
+    print(len(all_smile))
     #print valcabulary
     #print all_smile[0]
     #print all_smile[1]