From b26cfeee6908a89149a07d4a2287bfec4a784886 Mon Sep 17 00:00:00 2001
From: Taylor Salo <salot@pennmedicine.upenn.edu>
Date: Mon, 4 Nov 2024 14:29:08 -0500
Subject: [PATCH] Fix init_qc_report_wf connections when linc-qc and abcc-qc
 are disabled (#1314)

---
 .vscode/settings.json            | 4 ++++
 xcp_d/workflows/bold/plotting.py | 6 ++++++
 2 files changed, 10 insertions(+)

diff --git a/.vscode/settings.json b/.vscode/settings.json
index 3e91b9ae7..3aa558b75 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -7,4 +7,8 @@
         "editor.rulers": [99]
     },
     "python.analysis.typeCheckingMode": "off",
+    "ruff.configuration": "pyproject.toml",
+    "ruff.lineLength": 99,
+    "editor.defaultFormatter": "charliermarsh.ruff",
+    "flake8.enabled": false,
 }
diff --git a/xcp_d/workflows/bold/plotting.py b/xcp_d/workflows/bold/plotting.py
index 125de0e6c..c57115404 100644
--- a/xcp_d/workflows/bold/plotting.py
+++ b/xcp_d/workflows/bold/plotting.py
@@ -439,6 +439,12 @@ def init_qc_report_wf(
             (make_qc_plots_es, ds_report_postproc_qc_es, [('after_process', 'in_file')]),
         ])  # fmt:skip
 
+    if config.workflow.file_format != 'nifti' and not (
+        config.workflow.linc_qc or config.workflow.abcc_qc
+    ):
+        # Need to explicitly add the inputnode to the workflow, since it's not set otherwise.
+        workflow.add_nodes([inputnode])
+
     return workflow