CMakeLists.txt

cmake_minimum_required(VERSION 2.8.5)
project(mlpack C CXX)

# Ensure that we have a C++11 compiler.
include(CMake/CXX11.cmake)
check_for_cxx11_compiler(HAS_CXX11)
if(NOT HAS_CXX11)
  message(FATAL_ERROR "No C++11 compiler available!")
endif(NOT HAS_CXX11)
enable_cxx11()

# First, define all the compilation options.
# We default to debugging mode for developers.
option(DEBUG "Compile with debugging information" ON)
option(PROFILE "Compile with profiling information" ON)
option(ARMA_EXTRA_DEBUG "Compile with extra Armadillo debugging symbols." OFF)
option(MATLAB_BINDINGS "Compile MATLAB bindings if MATLAB is found." OFF)
option(TEST_VERBOSE "Run test cases with verbose output." OFF)

# Include modules in the CMake directory.
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/CMake")

# This is as of yet unused.
#option(PGO "Use profile-guided optimization if not a debug build" ON)

# Set the CFLAGS and CXXFLAGS depending on the options the user specified.
# Only GCC-like compilers support -Wextra, and other compilers give tons of
# output for -Wall, so only -Wall and -Wextra on GCC.
if(CMAKE_COMPILER_IS_GNUCC OR "${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra")
  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wall -Wextra")
endif(CMAKE_COMPILER_IS_GNUCC OR "${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")

# If using clang, we have to link against libc++ depending on the
# OS (at least on some systems). Further, gcc sometimes optimizes calls to
# math.h functions, making -lm unnecessary with gcc, but it may still be
# necessary with clang.
if("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
  IF (APPLE)
    # detect OS X version. Use '/usr/bin/sw_vers -productVersion' to
    # extract V from '10.V.x'.)
    EXEC_PROGRAM(/usr/bin/sw_vers ARGS
        -productVersion OUTPUT_VARIABLE MACOSX_VERSION_RAW)
    string(REGEX REPLACE
        "10\\.([0-9]+).*" "\\1"
        MACOSX_VERSION
        "${MACOSX_VERSION_RAW}")

     # OSX Lion (10.7) and OS X Mountain Lion (10.8) doesn't automatically
     # select the right stdlib.
    if(${MACOSX_VERSION} LESS 9)
      set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -stdlib=libc++")
      set(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} -stdlib=libc++")
      set(CMAKE_MODULE_LINKER_FLAGS "${CMAKE_MODULE_LINKER_FLAGS} -stdlib=libc++")
      set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
     endif(${MACOSX_VERSION} LESS 9)
  endif(APPLE)

  set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -lm")
  set(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} -lm")
  set(CMAKE_MODULE_LINKER_FLAGS "${CMAKE_MODULE_LINKER_FLAGS} -lm")
endif("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")

# Debugging CFLAGS.  Turn optimizations off; turn debugging symbols on.
if(DEBUG)
  add_definitions(-DDEBUG)
  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0")
  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -std=c99 -g -O0")
else()
  add_definitions(-DARMA_NO_DEBUG)
  add_definitions(-DNDEBUG)
  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O3")
  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -std=c99 -O3")
endif(DEBUG)

# Profiling CFLAGS.  Turn profiling information on.
if(CMAKE_COMPILER_IS_GNUCC AND PROFILE)
  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pg")
  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -pg")
  set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -pg")
endif(CMAKE_COMPILER_IS_GNUCC AND PROFILE)

# mlpack uses backtrace() facilities. On some systems (e.g., GNU/Linux), it
# resides in libc itself and requires <execinfo.h>; on other (e.g., OpenBSD)
# it's provided by a separate library.
find_package(Backtrace)
if(Backtrace_FOUND)
  include_directories(${Backtrace_INCLUDE_DIRS})
  add_definitions(-DBACKTRACE_FOUND)
  add_definitions(-DBACKTRACE_HEADER="${Backtrace_HEADER}")
endif(Backtrace_FOUND)

# If the user asked for running test cases with verbose output, turn that on.
if(TEST_VERBOSE)
  add_definitions(-DTEST_VERBOSE)
endif(TEST_VERBOSE)

# If the user asked for extra Armadillo debugging output, turn that on.
if(ARMA_EXTRA_DEBUG)
  add_definitions(-DARMA_EXTRA_DEBUG)
endif(ARMA_EXTRA_DEBUG)

# Now, find the libraries we need to compile against.  Several variables can be
# set to manually specify the directory in which each of these libraries
# resides.
#   ARMADILLO_LIBRARY - location of libarmadillo.so / armadillo.lib
#   ARMADILLO_INCLUDE_DIR - directory containing <armadillo>
#   ARMADILLO_INCLUDE_DIRS - directories necessary for Armadillo includes
#   BOOST_ROOT - root of Boost installation
#   BOOST_INCLUDEDIR - include directory for Boost
#   BOOST_LIBRARYDIR - library directory for Boost

find_package(Armadillo 3.6.0 REQUIRED)

# If Armadillo was compiled without ARMA_64BIT_WORD and we are on a 64-bit
# system (where size_t will be 64 bits), suggest to the user that they should
# compile Armadillo with 64-bit words.  Note that with Armadillo 5.000.0 and
# newer, ARMA_64BIT_WORD is enabled by default.
if(CMAKE_SIZEOF_VOID_P EQUAL 8)
  # Check the version, to see if ARMA_64BIT_WORD is enabled by default.
  set(ARMA_HAS_64BIT_WORD 0)
  if(NOT (${ARMADILLO_VERSION_MAJOR} LESS 5))
    set(ARMA_HAS_64BIT_WORD 1)
  else(NOT (${ARMADILLO_VERSION_MAJOR} LESS 5))
    # Can we open the configuration file?  If not, issue a warning.
    if(NOT EXISTS "${ARMADILLO_INCLUDE_DIR}/armadillo_bits/config.hpp")
      message(WARNING "Armadillo configuration file "
          "(${ARMADILLO_INCLUDE_DIR}/armadillo_bits/config.hpp) does not exist!")
    else(NOT EXISTS "${ARMADILLO_INCLUDE_DIR}/armadillo_bits/config.hpp")
      # We are on a 64-bit system.  Does Armadillo have ARMA_64BIT_WORD enabled?
      file(READ "${ARMADILLO_INCLUDE_DIR}/armadillo_bits/config.hpp" ARMA_CONFIG)
      string(REGEX MATCH
          "[\r\n][ ]*#define ARMA_64BIT_WORD"
          ARMA_HAS_64BIT_WORD_PRE
          "${ARMA_CONFIG}")

      string(LENGTH "${ARMA_HAS_64BIT_WORD_PRE}" ARMA_HAS_64BIT_WORD)
    endif(NOT EXISTS "${ARMADILLO_INCLUDE_DIR}/armadillo_bits/config.hpp")
  endif(NOT (${ARMADILLO_VERSION_MAJOR} LESS 5))

  if(ARMA_HAS_64BIT_WORD EQUAL 0)
    message(WARNING "This is a 64-bit system, but Armadillo was compiled "
        "without 64-bit index support.  Consider recompiling Armadillo with "
        "ARMA_64BIT_WORD to enable 64-bit indices (large matrix support). "
        "MLPACK will still work without ARMA_64BIT_WORD defined, but will not "
        "scale to matrices with more than 4 billion elements.")
  endif(ARMA_HAS_64BIT_WORD EQUAL 0)
endif(CMAKE_SIZEOF_VOID_P EQUAL 8)

# On Windows, Armadillo should be using LAPACK and BLAS but we still need to
# link against it.  We don't want to use the FindLAPACK or FindBLAS modules
# because then we are required to have a FORTRAN compiler (argh!) so we will try
# and find LAPACK and BLAS ourselves, using a slightly modified variant of the
# script Armadillo uses to find these.
if (WIN32)
  find_library(LAPACK_LIBRARY
      NAMES lapack liblapack lapack_win32_MT lapack_win32
      PATHS "C:/Program Files/Armadillo"
      PATH_SUFFIXES "examples/lib_win32/")

  if (NOT LAPACK_LIBRARY)
    message(FATAL_ERROR "Cannot find LAPACK library (.lib)!")
  endif (NOT LAPACK_LIBRARY)

  find_library(BLAS_LIBRARY
      NAMES blas libblas blas_win32_MT blas_win32
      PATHS "C:/Program Files/Armadillo"
      PATH_SUFFIXES "examples/lib_win32/")

  if (NOT BLAS_LIBRARY)
    message(FATAL_ERROR "Cannot find BLAS library (.lib)!")
  endif (NOT BLAS_LIBRARY)

  # Piggyback LAPACK and BLAS linking into Armadillo link.
  set(ARMADILLO_LIBRARIES
       ${ARMADILLO_LIBRARIES} ${BLAS_LIBRARY} ${LAPACK_LIBRARY})
endif (WIN32)

# Include directories for the previous dependencies.
include_directories(${ARMADILLO_INCLUDE_DIRS})

# Unfortunately this configuration variable is necessary and will need to be
# updated as time goes on and new versions are released.
set(Boost_ADDITIONAL_VERSIONS
  "1.49.0" "1.50.0" "1.51.0" "1.52.0" "1.53.0" "1.54.0" "1.55.0")
find_package(Boost 1.49
    COMPONENTS
      program_options
      unit_test_framework
      serialization
    REQUIRED
)
include_directories(${Boost_INCLUDE_DIRS})

link_directories(${Boost_LIBRARY_DIRS})

# In Visual Studio, automatic linking is performed, so we don't need to worry
# about it.  Clear the list of libraries to link against and let Visual Studio
# handle it.
if (MSVC)
  link_directories(${Boost_LIBRARY_DIRS})
  set(Boost_LIBRARIES "")
endif (MSVC)

# For Boost testing framework (will have no effect on non-testing executables).
# This specifies to Boost that we are dynamically linking to the Boost test
# library.
add_definitions(-DBOOST_TEST_DYN_LINK)

# Detect OpenMP support in a compiler. If the compiler supports OpenMP, the
# flags to compile with OpenMP are returned and added.
find_package(OpenMP)
if (OPENMP_FOUND)
  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
endif (OPENMP_FOUND)

# Create a 'distclean' target in case the user is using an in-source build for
# some reason.
include(CMake/TargetDistclean.cmake OPTIONAL)

include_directories(${CMAKE_SOURCE_DIR})

# On Windows, things end up under Debug/ or Release/.
if (WIN32)
  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR})
  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR})
  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR})
else (WIN32)
  # If not on Windows, put them under more standard UNIX-like places.  This is
  # necessary, otherwise they would all end up in
  # ${CMAKE_BINARY_DIR}/src/mlpack/methods/... or somewhere else random like
  # that.
  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib/)
  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin/)
  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib/)
endif (WIN32)

# Determine whether or not this is a git repository, so that we can set the
# version number if necessary.
find_package(Git)
set (USING_GIT "NO")
if (GIT_FOUND)
  # Run 'git rev-parse HEAD' to find out if this is a working copy. If the
  # return code is not 0, then it isn't.
  execute_process(COMMAND ${GIT_EXECUTABLE} rev-parse HEAD
      WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
      OUTPUT_VARIABLE MLPACK_TMP_REV_INFO
      ERROR_VARIABLE MLPACK_TMP_REV_INFO_ERROR
      RESULT_VARIABLE MLPACK_TMP_REV_INFO_RESULT
      OUTPUT_STRIP_TRAILING_WHITESPACE)
  if (${MLPACK_TMP_REV_INFO_RESULT} EQUAL 0)
    set (USING_GIT "YES")
    add_definitions(-D__MLPACK_GIT_VERSION)
    include(CMake/CreateGitVersionHeader.cmake)

    add_custom_target(mlpack_gitversion ALL
        COMMAND ${CMAKE_COMMAND} -P CMake/CreateGitVersionHeader.cmake
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
        COMMENT "Updating gitversion.hpp (if necessary)")
  # Add gitversion.hpp to the list of sources.
  set(MLPACK_SRCS ${MLPACK_SRCS}
      "${CMAKE_CURRENT_SOURCE_DIR}/src/mlpack/core/util/gitversion.hpp")
  endif (${MLPACK_TMP_REV_INFO_RESULT} EQUAL 0)
endif (GIT_FOUND)

# Recurse into the rest of the project.
add_subdirectory(src/mlpack)

# If we need to keep gitversion.hpp up to date, then make sure the mlpack target
# depends on it.
if (USING_GIT STREQUAL "YES")
  add_dependencies(mlpack mlpack_gitversion)
endif (USING_GIT STREQUAL "YES")

# Create a target to generate arma_config.hpp, which is used to warn the user
# when they are doing something stupid when linking something against mlpack.
include(CMake/CreateArmaConfigInfo.cmake)

add_custom_target(mlpack_arma_config ALL
    COMMAND ${CMAKE_COMMAND}
        -D ARMADILLO_INCLUDE_DIR="${ARMADILLO_INCLUDE_DIR}"
        -D ARMADILLO_VERSION_MAJOR="${ARMADILLO_VERSION_MAJOR}"
        -P CMake/CreateArmaConfigInfo.cmake
    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
    COMMENT "Updating arma_config.hpp (if necessary)")
set(MLPACK_SRCS ${MLPACK_SRCS}
    "${CMAKE_CURRENT_SOURCE_DIR}/src/mlpack/core/util/arma_config.hpp")
add_dependencies(mlpack mlpack_arma_config)

# Make a target to generate the documentation.  If Doxygen isn't installed, then
# I guess this option will just be unavailable.
find_package(Doxygen)
if (DOXYGEN_FOUND)
  # Preprocess the Doxyfile.  This is done before 'make doc'.
  add_custom_command(OUTPUT ${CMAKE_BINARY_DIR}/Doxyfile
      PRE_BUILD
      COMMAND ${CMAKE_COMMAND} -D DESTDIR="${CMAKE_BINARY_DIR}" -P
          "${CMAKE_CURRENT_SOURCE_DIR}/CMake/GenerateDoxyfile.cmake"
      WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}"
      COMMENT "Creating Doxyfile to generate Doxygen documentation"
  )

  # Generate documentation.
  add_custom_target(doc
      COMMAND "${DOXYGEN_EXECUTABLE}" "${CMAKE_BINARY_DIR}/Doxyfile"
      DEPENDS "${CMAKE_BINARY_DIR}/Doxyfile"
      WORKING_DIRECTORY "${CMAKE_BINARY_DIR}"
      COMMENT "Generating API documentation with Doxygen"
  )

  install(DIRECTORY ${CMAKE_BINARY_DIR}/doc/html
      DESTINATION share/doc/mlpack
      COMPONENT doc
      OPTIONAL
  )
endif (DOXYGEN_FOUND)

# Make a target to generate the man page documentation, but only if we are on a
# UNIX-like system.
if (UNIX)
  find_program(TXT2MAN txt2man)

  # It's not a requirement that we make man pages.
  if (NOT TXT2MAN)
    message(WARNING "txt2man not found; man pages will not be generated.")
  else (NOT TXT2MAN)
    # We have the tools.  We can make them.
    add_custom_target(man ALL
        ${CMAKE_CURRENT_SOURCE_DIR}/CMake/allexec2man.sh
            ${CMAKE_CURRENT_SOURCE_DIR}/CMake/exec2man.sh
            ${CMAKE_BINARY_DIR}/share/man
        WORKING_DIRECTORY
          ${CMAKE_BINARY_DIR}/bin
        DEPENDS
          allkfn allknn allkrann cf decision_stump det emst fastmks gmm
          hmm_generate hmm_loglik hmm_train hmm_viterbi kernel_pca kmeans lars
          linear_regression local_coordinate_coding logistic_regression lsh nbc
          nca nmf pca perceptron radical range_search sparse_coding
        COMMENT "Generating man pages from built executables."
    )

    # Set the rules to install the documentation.
    install(DIRECTORY ${CMAKE_BINARY_DIR}/share/man/
        DESTINATION share/man/man1/)
  endif (NOT TXT2MAN)
endif (UNIX)