Add missing quotation

treangenlab · Jun 28, 2024 · 40770ef · 40770ef
1 parent 1b7cedc
commit 40770ef
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lemur b/lemur
@@ -670,7 +670,7 @@ class LemurRunEnv():
         criteria has been met, stopping once it has.'''
         n_reads = len(set(self.P_rgs_df.reset_index()["Read_ID"]))
         if n_reads == 0:
-            self.log(f"No alignments available for EM algorithm.\nVerify SAM file, {self.self.args.output}P_rgs_df_raw.tsv, and consider lowering --min-aln-len-ratio or --fidelity flags., logging.ERROR)
+            self.log(f"No alignments available for EM algorithm.\nVerify SAM file, {self.self.args.output}P_rgs_df_raw.tsv, and consider lowering --min-aln-len-ratio or --fidelity flags.", logging.ERROR)
             exit(1)
         else:
             self.low_abundance_threshold = 1. / n_reads