AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

(Meta-)genome screening for functional and natural product gene sequences

A resistome profiler for Graphing Resistance Out Of meTagenomes

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

ARG normalization by mapping to the ARO ontology.

Desktop tool for microbial genome annotation and gene detection

Curation of Antibiotic Resistance Genes by using crowdsourcing

Python package to interact with the PATRIC database (https://www.patricbrc.org)

PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

Extract discriminatory ARGs from metagenomics samples

Antibiotic discovery using graph deep learning, with Chemprop.

Interpretable genotype-to-phenotype models with rule-based classifiers

Visualise your isolate's antibiotic resistance profile

Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.

Ecosystem of numerical methods for microbial kinetics data analysis, from preprocessing to result interpretation.

A simple package for simulations of microbial growth experiments with realistic sources of error.

This Github repository contains the files used to perform a master thesis about antibiotic resistance genes in wastewater.

Natural language processing chatbot answering questions about antibiotics and antibiotic resistance