From da70a64ef988041341f3da85aafb8423537dc571 Mon Sep 17 00:00:00 2001
From: kevinlibuit <kevin@libuit.com>
Date: Tue, 2 Mar 2021 06:15:19 +0000
Subject: [PATCH] fix if statement syntax

---
 tasks/task_se_pub_repo_submission.wdl | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/tasks/task_se_pub_repo_submission.wdl b/tasks/task_se_pub_repo_submission.wdl
index 1b92ef7a..e3f73434 100644
--- a/tasks/task_se_pub_repo_submission.wdl
+++ b/tasks/task_se_pub_repo_submission.wdl
@@ -218,15 +218,11 @@ task compile {
   vadr_array=(~{sep=' ' vadr_num_alerts})
   vadr_array_len=$(echo "${#vadr_array[@]}")
 
-  echo "Assembly array length: $assembly_array_len"
-  echo "Meta array length: $meta_array_len"
-  echo "VADR array length: $vadr_array_len"
-
   # Ensure assembly, meta, and vadr arrays are of equal length
   if [ "$assembly_array_len" -ne "$meta_array_len" ]; then
     echo "Assembly array (length: $assembly_array_len) and metadata array (length: $meta_array_len) are of unequal length."
     exit 1
-  elif ["$assembly_array_len" -ne "$vadr_array_len" ]; then
+  elif [ "$assembly_array_len" -ne "$vadr_array_len" ]; then
     echo "Assembly array (length: $assembly_array_len) and metadata array (length: $vadr_array_len) are of unequal length."
     exit 1
   fi