diff --git a/tasks/task_se_pub_repo_submission.wdl b/tasks/task_se_pub_repo_submission.wdl index 974bfbe2..1b92ef7a 100644 --- a/tasks/task_se_pub_repo_submission.wdl +++ b/tasks/task_se_pub_repo_submission.wdl @@ -218,7 +218,11 @@ task compile { vadr_array=(~{sep=' ' vadr_num_alerts}) vadr_array_len=$(echo "${#vadr_array[@]}") - # Ensure assembly, meta, and vadr arrays are of equal length + echo "Assembly array length: $assembly_array_len" + echo "Meta array length: $meta_array_len" + echo "VADR array length: $vadr_array_len" + + # Ensure assembly, meta, and vadr arrays are of equal length if [ "$assembly_array_len" -ne "$meta_array_len" ]; then echo "Assembly array (length: $assembly_array_len) and metadata array (length: $meta_array_len) are of unequal length." exit 1