From 81a8dd894321d21ec7d3a6d1aaf15beb2d3eb3b1 Mon Sep 17 00:00:00 2001
From: kevinlibuit <kevin@libuit.com>
Date: Fri, 5 Mar 2021 05:12:48 +0000
Subject: [PATCH] remove unecessary for block

---
 tasks/task_se_pub_repo_submission.wdl | 9 ---------
 1 file changed, 9 deletions(-)

diff --git a/tasks/task_se_pub_repo_submission.wdl b/tasks/task_se_pub_repo_submission.wdl
index a111cbae..a83b5e25 100644
--- a/tasks/task_se_pub_repo_submission.wdl
+++ b/tasks/task_se_pub_repo_submission.wdl
@@ -235,15 +235,6 @@ task compile {
     meta=${meta_array[$index]}
     vadr=${vadr_array[$index]}
 
-    echo Assembly: $assembly, vadr_num: $vadr, meta: $meta
-
-  done
-  for index in ${!assembly_array[@]}; do
-    assembly=${assembly_array[$index]}
-    meta=${meta_array[$index]}
-    vadr=${vadr_array[$index]}
-
-
     # remove samples from array if vadr_num exceedes threshold
     if [ "${vadr}" -gt "~{vadr_threshold}" ]; then
       echo "$assembly removed: vadr_num_alerts (${vadr}) exceeds vadr_threshold (~{vadr_threshold})"