diff --git a/tasks/task_se_pub_repo_submission.wdl b/tasks/task_se_pub_repo_submission.wdl index a54bf216..ea738ffa 100644 --- a/tasks/task_se_pub_repo_submission.wdl +++ b/tasks/task_se_pub_repo_submission.wdl @@ -242,8 +242,6 @@ task compile { while [ "$count" -lt 1 ]; do head -n -1 $i > ~{repository}_upload_meta.csv count+=1 - echo "Header: " - cat ~{repository}_upload_meta.csv done #populate csv with each samples metadata sed 's+",\".*\.gisaid\.fa+\",\"GISAID_upload.fasta+g' $i | tail -n1 >> ~{repository}_upload_meta.csv