diff --git a/tasks/task_ont_medaka.wdl b/tasks/task_ont_medaka.wdl index 438d5b48..33c25ecb 100644 --- a/tasks/task_ont_medaka.wdl +++ b/tasks/task_ont_medaka.wdl @@ -97,7 +97,6 @@ task consensus { count_pool_2=$(samtools view ~{samplename}.primertrimmed.nCoV-2019_2.sorted.bam | wc -l) count_total=$(( $count_pool_1 + $count_pool_2 )) - echo Python stuffs: python -c "print ( round(($count_pool_1 / $count_total ) * 100, 2) )" | tee POOL1_PERCENT python -c "print ( round(($count_pool_2 / $count_total ) * 100, 2) )" | tee POOL2_PERCENT