From f3996878e0c2cfd4d764591615b72486b8b78699 Mon Sep 17 00:00:00 2001 From: Sage Wright Date: Mon, 2 Oct 2023 15:40:23 +0000 Subject: [PATCH 1/2] update version --- tasks/species_typing/task_tbp_parser.wdl | 2 +- tasks/task_versioning.wdl | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/tasks/species_typing/task_tbp_parser.wdl b/tasks/species_typing/task_tbp_parser.wdl index 533d2e5f2..ec52703f9 100644 --- a/tasks/species_typing/task_tbp_parser.wdl +++ b/tasks/species_typing/task_tbp_parser.wdl @@ -13,7 +13,7 @@ task tbp_parser { Int coverage_threshold = 100 Boolean tbp_parser_debug = false - String docker = "us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:1.0.0" + String docker = "us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:1.0.1" Int disk_size = 100 Int memory = 4 Int cpu = 1 diff --git a/tasks/task_versioning.wdl b/tasks/task_versioning.wdl index 82bb93e76..964fb5ce0 100644 --- a/tasks/task_versioning.wdl +++ b/tasks/task_versioning.wdl @@ -8,7 +8,7 @@ task version_capture { volatile: true } command { - PHB_Version="PHB v1.1.0" + PHB_Version="PHB v1.2.0" ~{default='' 'export TZ=' + timezone} date +"%Y-%m-%d" > TODAY echo "$PHB_Version" > PHB_VERSION From b3440a388043d4f1677f3c4f53c1e297284d2138 Mon Sep 17 00:00:00 2001 From: kapsakcj Date: Mon, 2 Oct 2023 12:25:26 -0400 Subject: [PATCH 2/2] update CI --- tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml | 2 +- tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml index 2986d6984..d5d7986c2 100644 --- a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml +++ b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml @@ -624,7 +624,7 @@ - path: miniwdl_run/wdl/tasks/species_typing/task_ts_mlst.wdl md5sum: d49ae0b02e798af0636eb2721bb434b4 - path: miniwdl_run/wdl/tasks/task_versioning.wdl - md5sum: c178145bad99e3858a1327b3774177f3 + md5sum: 9c02b95d23a602d9842fdeac883037b1 - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl md5sum: 08987d952c67c6ff6debf6898af15f9a - path: miniwdl_run/wdl/tasks/taxon_id/task_kraken2.wdl diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml index 17bbbdb08..33bb9d8b1 100644 --- a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml +++ b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml @@ -592,7 +592,7 @@ - path: miniwdl_run/wdl/tasks/species_typing/task_ts_mlst.wdl md5sum: d49ae0b02e798af0636eb2721bb434b4 - path: miniwdl_run/wdl/tasks/task_versioning.wdl - md5sum: c178145bad99e3858a1327b3774177f3 + md5sum: 9c02b95d23a602d9842fdeac883037b1 - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl md5sum: 08987d952c67c6ff6debf6898af15f9a - path: miniwdl_run/wdl/tasks/taxon_id/task_kraken2.wdl