From d588b87415598b0fd7c8c64d8bed89808fc42d4d Mon Sep 17 00:00:00 2001 From: kapsakcj Date: Wed, 20 Sep 2023 15:58:51 -0400 Subject: [PATCH] typo in ceftriaxone --- tasks/gene_typing/task_resfinder.wdl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tasks/gene_typing/task_resfinder.wdl b/tasks/gene_typing/task_resfinder.wdl index f701d705a..d50faf870 100644 --- a/tasks/gene_typing/task_resfinder.wdl +++ b/tasks/gene_typing/task_resfinder.wdl @@ -113,8 +113,8 @@ task resfinder { grep -qi "trimethoprim" RESFINDER_PREDICTED_PHENO_RESISTANCE.txt && \ grep -qi "sulfamethoxazole" RESFINDER_PREDICTED_PHENO_RESISTANCE.txt && \ grep -qi "ampicillin" RESFINDER_PREDICTED_PHENO_RESISTANCE.txt; then - echo "XDR Shigella based on predicted resistance to ceftriazone, azithromycin, ciprofloxacin, trimethoprim, sulfamethoxazole, and ampicillin. Please verify by reviewing ~{samplename}_pheno_table.tsv and ~{samplename}_ResFinder_results_tab.tsv" - echo "XDR Shigella based on predicted resistance to ceftriazone, azithromycin, ciprofloxacin, trimethoprim, sulfamethoxazole, and ampicillin. Please verify by reviewing ~{samplename}_pheno_table.tsv and ~{samplename}_ResFinder_results_tab.tsv" > RESFINDER_PREDICTED_XDR_SHIGELLA.txt + echo "XDR Shigella based on predicted resistance to ceftriaxone, azithromycin, ciprofloxacin, trimethoprim, sulfamethoxazole, and ampicillin. Please verify by reviewing ~{samplename}_pheno_table.tsv and ~{samplename}_ResFinder_results_tab.tsv" + echo "XDR Shigella based on predicted resistance to ceftriaxone, azithromycin, ciprofloxacin, trimethoprim, sulfamethoxazole, and ampicillin. Please verify by reviewing ~{samplename}_pheno_table.tsv and ~{samplename}_ResFinder_results_tab.tsv" > RESFINDER_PREDICTED_XDR_SHIGELLA.txt else echo "Not predicted as XDR Shigella" echo "Not predicted as XDR Shigella" > RESFINDER_PREDICTED_XDR_SHIGELLA.txt