From cca9459c7ea301f70a04d311dc53186233ba7c6b Mon Sep 17 00:00:00 2001 From: Sage Wright Date: Fri, 8 Dec 2023 14:52:57 +0000 Subject: [PATCH] update nextclade tags --- workflows/utilities/wf_organism_parameters.wdl | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/workflows/utilities/wf_organism_parameters.wdl b/workflows/utilities/wf_organism_parameters.wdl index 120adcc31..11482ac23 100644 --- a/workflows/utilities/wf_organism_parameters.wdl +++ b/workflows/utilities/wf_organism_parameters.wdl @@ -74,25 +74,25 @@ workflow organism_parameters { if (flu_segment == "HA") { if (flu_subtype == "H1N1") { String h1n1_ha_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_h1n1pdm_ha.fasta" - String h1n1_ha_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String h1n1_ha_nextclade_ds_tag = "2023-11-18T12:00:00Z" String h1n1_ha_nextclade_ds_name = "flu_h1n1pdm_ha" String h1n1_ha_nextclade_ref = "MW626062" } if (flu_subtype == "H3N2") { String h3n2_ha_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_h3n2_ha.fasta" - String h3n2_ha_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String h3n2_ha_nextclade_ds_tag = "2023-11-18T12:00:00Z" String h3n2_ha_nextclade_ds_name = "flu_h3n2_ha" String h3n2_ha_nextclade_ref = "EPI1857216" } if (flu_subtype == "Victoria") { String vic_ha_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_vic_ha.fasta" - String vic_ha_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String vic_ha_nextclade_ds_tag = "2023-11-22T12:00:00Z" String vic_ha_nextclade_ds_name = "flu_vic_ha" String vic_ha_nextclade_ref = "KX058884" } if (flu_subtype == "Yamagata") { String yam_ha_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_yam_ha.fasta" - String yam_ha_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String yam_ha_nextclade_ds_tag = "2023-11-18T12:00:00Z" String yam_ha_nextclade_ds_name = "flu_yam_ha" String yam_ha_nextclade_ref = "JN993010" } @@ -100,19 +100,19 @@ workflow organism_parameters { if (flu_segment == "NA") { if (flu_subtype == "H1N1") { String h1n1_na_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_h1n1pdm_na.fasta" - String h1n1_na_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String h1n1_na_nextclade_ds_tag = "2023-11-18T12:00:00Z" String h1n1_na_nextclade_ds_name = "flu_h1n1pdm_na" String h1n1_na_nextclade_ref = "MW626056" } if (flu_subtype == "H3N2") { String h3n2_na_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_h3n2_na.fasta" - String h3n2_na_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String h3n2_na_nextclade_ds_tag = "2023-11-18T12:00:00Z" String h3n2_na_nextclade_ds_name = "flu_h3n2_na" String h3n2_na_nextclade_ref = "EPI1857215" } if (flu_subtype == "Victoria") { String vic_na_reference = "gs://theiagen-public-files-rp/terra/flu-references/reference_vic_na.fasta" - String vic_na_nextclade_ds_tag = "2023-08-10T12:00:00Z" + String vic_na_nextclade_ds_tag = "2023-11-18T12:00:00Z" String vic_na_nextclade_ds_name = "flu_vic_na" String vic_na_nextclade_ref = "CY073894" }