diff --git a/workflows/theiacov/wf_theiacov_fasta.wdl b/workflows/theiacov/wf_theiacov_fasta.wdl index 1f0a5374d..7ebe98b95 100644 --- a/workflows/theiacov/wf_theiacov_fasta.wdl +++ b/workflows/theiacov/wf_theiacov_fasta.wdl @@ -162,7 +162,7 @@ workflow theiacov_fasta { nextclade_flu_vic_na_tag = nextclade_flu_vic_na_tag, nextclade_flu_yam_tag = nextclade_flu_yam_tag } - String abricate_subtype = abricate_flu.abricate_flu_subtype + String? abricate_subtype = abricate_flu.abricate_flu_subtype } if (flu_segment == "HA") { if ((defined(flu_subtype) && flu_subtype == "H1N1") || (defined(abricate_subtype) && (abricate_subtype == "H1N1" || abricate_subtype == "H1"))) {