diff --git a/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl b/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl index e960a7eb1..2fa51347a 100644 --- a/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl +++ b/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl @@ -625,6 +625,8 @@ workflow theiaprok_illumina_pe { File? resfinder_results = resfinder_task.resfinder_results_tab File? resfinder_pointfinder_pheno_table = resfinder_task.pointfinder_pheno_table File? resfinder_pointfinder_results = resfinder_task.pointfinder_results + String? resfinder_predicted_pheno_resistance = resfinder_task.resfinder_predicted_pheno_resistance + String? resfinder_predicted_xdr_shigella = resfinder_task.resfinder_predicted_xdr_shigella String? resfinder_db_version = resfinder_task.resfinder_db_version String? resfinder_docker = resfinder_task.resfinder_docker # MLST Typing