From 751621bb0f77c65bb550a50232e5904de17821cc Mon Sep 17 00:00:00 2001 From: cimendes Date: Thu, 21 Sep 2023 12:40:41 +0000 Subject: [PATCH] try fix --- workflows/utilities/wf_merlin_magic.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/utilities/wf_merlin_magic.wdl b/workflows/utilities/wf_merlin_magic.wdl index 22124be37..84fd6ec09 100644 --- a/workflows/utilities/wf_merlin_magic.wdl +++ b/workflows/utilities/wf_merlin_magic.wdl @@ -246,7 +246,7 @@ workflow merlin_magic { call tbprofiler_task.tbprofiler { input: read1 = select_first([clockwork_decon_reads.clockwork_cleaned_read1,read1]), - read2 = select_first([clockwork_decon_reads.clockwork_cleaned_read2,read2]), + read2 = select_first([clockwork_decon_reads.clockwork_cleaned_read2,read2,'']), samplename = samplename } if (tbprofiler_additional_outputs) {