From 5227d77f7e95097f5b3e5d66048cdf2bbdc61c67 Mon Sep 17 00:00:00 2001
From: Ash O'Farrell <aofarrel@ucsc.edu>
Date: Thu, 14 Sep 2023 06:57:00 -0700
Subject: [PATCH] Add preemptible, shorter version string (#185)

---
 tasks/species_typing/task_tbp_parser.wdl | 3 ++-
 tasks/species_typing/task_tbprofiler.wdl | 5 +++--
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/tasks/species_typing/task_tbp_parser.wdl b/tasks/species_typing/task_tbp_parser.wdl
index f86302275..2f5824979 100644
--- a/tasks/species_typing/task_tbp_parser.wdl
+++ b/tasks/species_typing/task_tbp_parser.wdl
@@ -50,6 +50,7 @@ task tbp_parser {
     cpu: cpu
     disks: "local-disk " + disk_size + " SSD"
     disk: disk_size + " GB"
-    maxRetries: 3 
+    maxRetries: 3
+    preemptible: 1
   }
 }
\ No newline at end of file
diff --git a/tasks/species_typing/task_tbprofiler.wdl b/tasks/species_typing/task_tbprofiler.wdl
index a3a881243..7b9cad530 100644
--- a/tasks/species_typing/task_tbprofiler.wdl
+++ b/tasks/species_typing/task_tbprofiler.wdl
@@ -22,7 +22,7 @@ task tbprofiler {
     date | tee DATE
 
     # Print and save version
-    tb-profiler version > VERSION && sed -i -e 's/^/TBProfiler version /' VERSION
+    tb-profiler version > VERSION && sed -i -e 's/TBProfiler version //' VERSION && sed -n -i '$p' VERSION
     
     if [ -z "~{read2}" ] ; then
       INPUT_READS="-1 ~{read1}"
@@ -119,6 +119,7 @@ task tbprofiler {
     cpu: cpu
     disks: "local-disk " + disk_size + " SSD"
     disk: disk_size + " GB"
-    maxRetries: 3 
+    maxRetries: 3
+    preemptible: 1
   }
 }
\ No newline at end of file