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add fastq-scan additional outputs - read lengths #147

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kapsakcj opened this issue Sep 16, 2022 · 0 comments
Open

add fastq-scan additional outputs - read lengths #147

kapsakcj opened this issue Sep 16, 2022 · 0 comments
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enhancement New feature or request priority:1 (low) lowest priority. On the back burner

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@kapsakcj
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I oftentimes have to dig deep into the execution directories to find the fastq-scan output JSON to see mean and median read lengths

It would be nice to float the mean and median read lengths to 2 output columns.

Additionally output the JSON as a 3rd new column.

The average/mean read length is available in the cg_pipeline output TSV, which is an output column, but you have to download the file to view for each sample (bit of a pain)

@kapsakcj kapsakcj added enhancement New feature or request priority:1 (low) lowest priority. On the back burner labels Sep 16, 2022
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Labels
enhancement New feature or request priority:1 (low) lowest priority. On the back burner
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