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subsample reads before processing #112

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kevinlibuit opened this issue Jul 1, 2022 · 2 comments
Open

subsample reads before processing #112

kevinlibuit opened this issue Jul 1, 2022 · 2 comments

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@kevinlibuit
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No description provided.

@kapsakcj
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partially addressed via #122 RASUSA single-task workflow.

Not sure if this issue was meant for adding into the existing TheiaProk workflow or not. shovill does do subsampling by default but yes, it's possible for pre-shovill tasks to crash if the input FASTQs are gigantic

@sage-wright
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resolved with #122

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@kapsakcj @kevinlibuit @sage-wright