.travis.yml

dist: bionic
language: java
sudo: required
env:
- COMPOSE_FILE=docker-compose.devel.yml MODELS=$TRAVIS_BUILD_DIR/bigg_models_data/models
jdk:
- openjdk11
services:
- docker
notifications:
  slack:
    secure: 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
  email: false

before_install:
- git clone https://github.com/SBRG/bigg_models_data
install:
# use current build artifact instead of published version
- printf "FROM openjdk:11-slim\n\nCOPY ModelPolisher-2.1-beta.jar /\nCMD \"/bin/sh\"" > docker/java_docker/Dockerfile
- gradle devel
- docker-compose up -d
- docker ps -a
before_script:
# wait for both databases to accept connections
- echo "Waiting for databases"
- while ! pg_isready -h 0.0.0.0 -p 1310 > /dev/null; do sleep 1; done
- while ! pg_isready -h 0.0.0.0 -p 1013 > /dev/null; do sleep 1; done
- echo "Databases are up"
script:
- travis_wait docker-compose run -v $MODELS:/models polisher sh -c "java -jar /ModelPolisher-2.1-beta.jar --input=/models/ecoli_core_model.xml --output=/models/out/ecoli_core_model.xml --annotate-with-bigg=true --add-adb-annotations=true --output-combine=true && ls -lish models/out"
- travis_wait docker-compose run -v $MODELS:/models polisher sh -c "java -jar /ModelPolisher-2.1-beta.jar --input=/models/yeast_7.00.xml --output=/models/out/yeast_7.00.xml --annotate-with-bigg=true --add-adb-annotations=true --output-combine=true && ls -lish models/out"
- travis_wait docker-compose run -v $MODELS:/models polisher sh -c "java -jar /ModelPolisher-2.1-beta.jar --input=/models/RECON1.xml --output=/models/out/RECON1.xml --annotate-with-bigg=true --add-adb-annotations=true --output-combine=true && ls -lish models/out"
after_script:
- docker-compose down
git:
  depth: 1