setThreshold.m

function setThreshold(folder,config_file)
if nargin < 1 || exist(folder, 'dir')~=7
  [folder] = uigetdir('', 'Select the folder that contains the experiment');
  if folder==0
    return;
  end
end
%define and clear the logfile
log=fullfile(folder, 'AutoTipTrack_log.txt');
warning off MATLAB:DELETE:FileNotFound
delete(log);
warning on MATLAB:DELETE:FileNotFound
if nargin < 2 || exist(config_file, 'file')~=2
  %try to read experiment default config
  config_file=fullfile(folder,'config.mat');
  if exist(config_file, 'file')~=2
    %create a config file if none exists
    fConfigGui('Create',folder);
  end
end
if ~isdeployed
  addpath('assets')
end
if strendswith(folder,filesep)
  folder=folder(1:end-1);
end
%create an empty GUI handle
hEvalGui=EvalGui;
%create the root node here
rootNode=hEvalGui.createNode(folder,true);

%recursively scan the directory structure for stacks and add them to the
%queue
queue=enqueueManyExperiments(rootNode,config_file,hEvalGui);

%start the timer that watches the progress
hEvalGui.addTree(rootNode,'Threshold',true);
hEvalGui.expandAllNodes;
drawnow;
% timer=hEvalGui.watchProgress;
% hEvalGui.Log=log;

uiwait(hEvalGui.fig);
hEvalGui.close;
%clean up
if ~isdeployed
  rmpath('assets')
end
allMsg=[queue.Message];
queue.finish;
queue.delete;
%make sure the timer is stopped
try
  stop(timer);
  delete(timer);
catch
end
if ~isempty(allMsg)
  warning(allMsg);
end